ReQON

DOI: 10.18129/B9.bioc.ReQON  

This is the development version of ReQON; for the stable release version, see ReQON.

Recalibrating Quality Of Nucleotides

Bioconductor version: Development (3.19)

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version	1.49.0
In Bioconductor since	BioC 2.9 (R-2.14) (12 years)
License	GPL-2
Depends	R (>= 3.0.2), Rsamtools, seqbias
Imports	rJava, graphics, stats, utils, grDevices
LinkingTo
Suggests	BiocStyle
SystemRequirements	Java version >= 1.6
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ReQON
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ReQON
Package Short Url	https://bioconductor.org/packages/ReQON/
Package Downloads Report	Download Stats