ReQON

DOI: 10.18129/B9.bioc.ReQON  

This is the development version of ReQON; for the stable release version, see ReQON.

Recalibrating Quality Of Nucleotides

Bioconductor version: Development (3.18)

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

 

PDF	R Script	ReQON Tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version	1.47.0
In Bioconductor since	BioC 2.9 (R-2.14) (11.5 years)
License	GPL-2
Depends	R (>= 3.0.2), Rsamtools, seqbias
Imports	rJava, graphics, stats, utils, grDevices
LinkingTo
Suggests	BiocStyle
SystemRequirements	Java version >= 1.6
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ReQON_1.47.0.tar.gz
Windows Binary	ReQON_1.47.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ReQON
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ReQON
Bioc Package Browser	https://code.bioconductor.org/browse/ReQON/
Package Short Url	https://bioconductor.org/packages/ReQON/
Package Downloads Report	Download Stats