MobilityTransformR

DOI: 10.18129/B9.bioc.MobilityTransformR  

This is the development version of MobilityTransformR; for the stable release version, see MobilityTransformR.

Effective mobility scale transformation of CE-MS(/MS) data

Bioconductor version: Development (3.19)

MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.

Author: Liesa Salzer [cre, aut]

Maintainer: Liesa Salzer <liesa.salzer at helmholtz-muenchen.de>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MobilityTransformR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MobilityTransformR")

 

HTML	R Script	Description and usage of MobilityTransformR
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, MassSpectrometry, Metabolomics, Preprocessing, Proteomics, Software
Version	1.7.0
In Bioconductor since	BioC 3.15 (R-4.2) (1.5 years)
License	Artistic-2.0
Depends	MSnbase, R (>= 4.2)
Imports	xcms, MetaboCoreUtils, Spectra
LinkingTo
Suggests	testthat, msdata(>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
SystemRequirements
Enhances
URL	https://github.com/LiesaSalzer/MobilityTransformR
BugReports	https://github.com/LiesaSalzer/MobilityTransformR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MobilityTransformR_1.7.0.tar.gz
Windows Binary	MobilityTransformR_1.7.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MobilityTransformR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MobilityTransformR
Bioc Package Browser	https://code.bioconductor.org/browse/MobilityTransformR/
Package Short Url	https://bioconductor.org/packages/MobilityTransformR/
Package Downloads Report	Download Stats