GOFunction

DOI: 10.18129/B9.bioc.GOFunction    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of GOFunction; for the stable release version, see GOFunction.

GO-function: deriving biologcially relevant functions from statistically significant functions

Bioconductor version: Development (3.12)

The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Citation (from within R, enter citation("GOFunction")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GOFunction")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews GO, GeneSetEnrichment, Microarray, Pathways, Software
Version 1.37.1
In Bioconductor since BioC 2.9 (R-2.14) (9 years)
License GPL (>= 2)
Depends R (>= 2.11.0), methods, Biobase(>= 2.8.0), graph(>= 1.26.0), Rgraphviz(>= 1.26.0), GO.db(>= 2.4.1), AnnotationDbi(>= 1.10.2), SparseM (>= 0.85)
Imports methods, Biobase, graph, Rgraphviz, GO.db, AnnotationDbi, DBI, SparseM
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/GOFunction
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOFunction
Package Short Url https://bioconductor.org/packages/GOFunction/
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