Interaction Based Homogeneity for Evaluating Gene Lists

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Documentation for package ‘ibh’ version 1.57.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ibh-package	Interaction Based Homogeneity
findEntry	Find the index of an entry in an interaction list
ibh	Calculate interaction based homogeneity for the given gene list according to the interaction list
ibhBioGRID	Calculate interaction based homogeneity for a gene list according to the BioGRID Interactions
ibhClusterEval	Evaluate clustering with interaction based homogeneity
ibhClusterEvalBioGRID	Evaluate clustering with interaction based homogeneity using BioGRID Interactions
ibhForMultipleGeneLists	Calculate interaction based homogeneity for multiple gene lists according to the interaction list
ibhForMultipleGeneListsBioGRID	Calculate interaction based homogeneity for multiple gene lists according to the BioGRID Interactions
readDirectedInteractionsFromCsv	Read directed interactions from csv and create the interaction list
readUndirectedInteractionsFromCsv	Read undirected interactions from csv and create the interaction list