| 12Mm250.gpr | Example GPR files |
| 9Mm137.gpr | Example GPR files |
| agcontrolCode | Diagnostic plots and comparative boxplots for general hybridization, Agilent format |
| agQuality | Diagnostic plots and comparative boxplots for general hybridization, Agilent format |
| arrayControls | Internal arrayQuality functions |
| arrayReplicates | Internal arrayQuality functions |
| arrayScal | Internal arrayQuality functions |
| BEbin.linear | Internal arrayQuality functions |
| controlCodeHeebo | Internal arrayQuality functions |
| controlCodeMeebo | Internal arrayQuality functions |
| EMSplit | Internal arrayQuality functions |
| getSpikeIds | Internal arrayQuality functions |
| getSpikeIndex | Internal arrayQuality functions |
| globalQuality | Quality measures for general hybridization. |
| gpFlagWt | Internal arrayQuality functions |
| gpQuality | Diagnostic plots and comparative boxplots for general hybridization |
| heeboQuality | Diagnostics plots designed for HEEBO set controls |
| heeboQualityPlots | Qualitative diagnostic plot for general hybridization, specific to HEEBO set. |
| HeeboSpotTypes | Internal arrayQuality functions |
| HsReferenceDB | Reference slides for Mouse oligos hybridizations |
| index.html | Reference slides for Mouse oligos hybridizations |
| maQualityPlots | Qualitative diagnostic plot for general hybridization |
| meeboQuality | Diagnostics plots designed for MEEBO set controls |
| meeboQualityPlots | Qualitative diagnostic plot for general hybridization, specific to MEEBO set. |
| MeeboSpotTypes | Internal arrayQuality functions |
| MmDEGenes | Known DE genes for Mouse quality hybridizations. |
| MmReferenceDB | Reference slides for Mouse oligos hybridizations |
| outputNormData | Internal arrayQuality functions |
| PRv9mers | Print Run Quality version 9mers |
| PRvQCHyb | Print run Quality version Quality Control Hybridization |
| qcScore | Quality Control score for general hybridization |
| qpBEplot.linear | Internal arrayQuality functions |
| qpBoxplotMeebo | Internal arrayQuality functions |
| qpDotPlots | Internal arrayQuality functions |
| qpDotPlotsEEBO | Internal arrayQuality functions |
| qpDotPlotsMeebo | Internal arrayQuality functions |
| qpDotPlotsMeebo2 | Internal arrayQuality functions |
| qpHexbin | Internal arrayQuality functions |
| qpImage | Internal arrayQuality functions |
| qpMAPlots | Internal arrayQuality functions |
| qpMisMatchPlot | Internal arrayQuality functions |
| qpPTLoess | Internal arrayQuality functions |
| qpS2N | Internal arrayQuality functions |
| qpS2Neebo | Internal arrayQuality functions |
| qpS2Nmeebo | Internal arrayQuality functions |
| qpTiling | Internal arrayQuality functions |
| qualBoxplot | Comparative boxplot for general hybridization Quality Control |
| quality2HTML | Internal arrayQuality functions |
| qualityScore | Quality Control score for general hybridization |
| readAgilent | Extraction of measures from Agilent (.txt) files. |
| readAllSpikes | Internal arrayQuality functions |
| readcontrolCode | Control status information |
| readGPR | Reading GenePix gpr file |
| readSpikeTypes | Read Spike Types File |
| readSpot | Extraction of measures from Spot (.spot) files. |
| replicatesAvariance | Internal arrayQuality functions |
| scaleRefTable | General hybridization quality scaling |
| setCtlCol | Internal arrayQuality functions |
| slideQuality | Quality Control statistics for general hybridization |
| Spike.Cy5vsCy3 | Internal arrayQuality functions |
| Spike.Individual.Sensitivity | Internal arrayQuality functions |
| Spike.MM.Scatter | Internal arrayQuality functions |
| Spike.MMplot | Internal arrayQuality functions |
| Spike.Sensitivity | Internal arrayQuality functions |
| spotQuality | Diagnostic plots and comparative boxplots for general hybridization, Spot format |