SpaceTrooper performs Quality Control analysis of Image-Based
spatial
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Documentation for package ‘SpaceTrooper’ version 0.99.3
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| .getActiveGeometryName | .getActiveGeometryName |
| .renameGeometry | .renameGeometry |
| .setActiveGeometry | .setActiveGeometry |
| addPolygonsToSPE | addPolygonsToSPE |
| computeAreaFromPolygons | computeAreaFromPolygons |
| computeAspectRatioFromPolygons | computeAspectRatioFromPolygons |
| computeCenterFromPolygons | computeCenterFromPolygons |
| computeLambda | computeLambda |
| computeMissingMetricsMerfish | computeMissingMetricsMerfish |
| computeMissingMetricsXenium | computeMissingMetricsXenium |
| computeQScore | computeQScore |
| computeQScoreFlags | computeQScoreFlags |
| computeSpatialOutlier | computeSpatialOutlier |
| computeThresholdFlags | computeThresholdFlags |
| computeTrainDF | computeTrainDF |
| getFencesOutlier | getFencesOutlier |
| getModelFormula | getModelFormula |
| plotCellsFovs | plotCellsFovs |
| plotCentroids | plotCentroids |
| plotMetricHist | plotMetricHist |
| plotPolygons | plotPolygons |
| plotQScoreTerms | plotQScoreTerms |
| plotZoomFovsMap | plotZoomFovsMap |
| qcFlagPlots | qcFlagPlots |
| readAndAddPolygonsToSPE | readAndAddPolygonsToSPE |
| readCosmxProteinSPE | readCosmxSPE |
| readCosmxSPE | readCosmxSPE |
| readMerfishSPE | readMerfishSPE |
| readPolygons | readPolygons |
| readPolygonsCosmx | readPolygonsCosmx |
| readPolygonsMerfish | readPolygonsMerfish |
| readPolygonsXenium | readPolygonsXenium |
| readXeniumSPE | Load data from a 10x Genomics Xenium experiment |
| spatialPerCellQC | spatialPerCellQC |
| trainModel | trainModel |