A Bayesian Approach for Geneset Selection

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Documentation for package ‘BAGS’ version 2.49.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BAGS-package	A Bayesian Approach for Geneset Selection (BAGS).
AnnotationMFGO	List containing a collection of gene symbols with their associated GO term for the Molecular function ontology
BAGS	A Bayesian Approach for Geneset Selection (BAGS).
DataGeneSets	Function that filters the gene sets to work with the desired size.
Gibbs2	Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
Gibbs3	Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
Gibbs4	Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
Gibbs5	Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
MCMCDataSet	Function that transform the dataset into the required format for the Gibbs sampler.
ReadGMT	Function that extracts the gene set definition from a .gmt file.