Nearest Neighbor Detection for Bioconductor Packages

---

Documentation for package ‘BiocNeighbors’ version 1.21.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A B D E F H K Q R S V misc

BiocNeighbors-package

BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages

-- A --

AnnoyIndex	The AnnoyIndex class
AnnoyIndex-class	The AnnoyIndex class
AnnoyIndex_path	The AnnoyIndex class
AnnoyIndex_search_mult	The AnnoyIndex class
AnnoyParam	The AnnoyParam class
AnnoyParam-class	The AnnoyParam class
AnnoyParam_directory	The AnnoyParam class
AnnoyParam_ntrees	The AnnoyParam class
AnnoyParam_search_mult	The AnnoyParam class

-- B --

BiocNeighborIndex	The BiocNeighborIndex class
BiocNeighborIndex-class	The BiocNeighborIndex class
BiocNeighborParam	The BiocNeighborParam class
BiocNeighborParam-class	The BiocNeighborParam class
BiocNeighbors	BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages
BiocNeighbors-algorithms	Neighbor search algorithms
BiocNeighbors-raw-index	Reporting raw indices
BiocNeighbors-ties	Handling tied distances
bndata	The BiocNeighborIndex class
bndata-method	The BiocNeighborIndex class
bndistance	The BiocNeighborIndex class
bndistance-method	The BiocNeighborIndex class
bndistance-method	The BiocNeighborParam class
bnorder	The BiocNeighborIndex class
bnorder-method	The AnnoyIndex class
bnorder-method	The ExhaustiveIndex class
bnorder-method	The HnswIndex class
bnorder-method	The KmknnIndex class
bnorder-method	The VptreeIndex class
buildAnnoy	Build an Annoy index
buildExhaustive	Prepare data for an exhaustive search
buildHnsw	Build a HNSW index
buildIndex	Build a nearest-neighbor index
buildIndex-method	Build a nearest-neighbor index
buildKmknn	Pre-cluster points with k-means
buildVptree	Build a VP tree

-- D --

dim-method	The BiocNeighborIndex class
dimnames-method	The BiocNeighborIndex class

-- E --

ExhaustiveIndex	The ExhaustiveIndex class
ExhaustiveIndex-class	The ExhaustiveIndex class
ExhaustiveParam	The ExhaustiveParam class
ExhaustiveParam-class	The ExhaustiveParam class

-- F --

findAnnoy	Find nearest neighbors
findExhaustive	Find nearest neighbors
findHnsw	Find nearest neighbors
findKmknn	Find nearest neighbors
findKNN	Find k-nearest neighbors
findKNN-functions	Find nearest neighbors
findKNN-method	Find k-nearest neighbors
findKNN-methods	Find k-nearest neighbors
findMutualNN	Find mutual nearest neighbors
findNeighbors	Find all neighbors in range
findNeighbors-functions	Find all neighbors in range
findNeighbors-method	Find all neighbors in range
findNeighbors-methods	Find all neighbors in range
findVptree	Find nearest neighbors

-- H --

HnswIndex	The HnswIndex class
HnswIndex-class	The HnswIndex class
HnswIndex_ef_search	The HnswIndex class
HnswIndex_path	The HnswIndex class
HnswParam	The HnswParam class
HnswParam-class	The HnswParam class
HnswParam_directory	The HnswParam class
HnswParam_ef_construction	The HnswParam class
HnswParam_ef_search	The HnswParam class
HnswParam_nlinks	The HnswParam class

-- K --

KmknnIndex	The KmknnIndex class
KmknnIndex-class	The KmknnIndex class
KmknnIndex_cluster_centers	The KmknnIndex class
KmknnIndex_cluster_info	The KmknnIndex class
KmknnParam	The KmknnParam class
KmknnParam-class	The KmknnParam class
KmknnParam_kmeans_args	The KmknnParam class

-- Q --

queryAnnoy	Query nearest neighbors
queryExhaustive	Query nearest neighbors
queryHnsw	Query nearest neighbors
queryKmknn	Query nearest neighbors
queryKNN	Query k-nearest neighbors
queryKNN-functions	Query nearest neighbors
queryKNN-method	Query k-nearest neighbors
queryKNN-methods	Query k-nearest neighbors
queryNeighbors	Query all neighbors
queryNeighbors-functions	Query neighbors in range
queryNeighbors-method	Query all neighbors
queryNeighbors-methods	Query all neighbors
queryVptree	Query nearest neighbors

-- R --

rangeFindExhaustive	Find all neighbors in range
rangeFindKmknn	Find all neighbors in range
rangeFindVptree	Find all neighbors in range
rangeQueryExhaustive	Query neighbors in range
rangeQueryKmknn	Query neighbors in range
rangeQueryVptree	Query neighbors in range

-- S --

show-method	The AnnoyIndex class
show-method	The AnnoyParam class
show-method	The BiocNeighborIndex class
show-method	The BiocNeighborParam class
show-method	The HnswIndex class
show-method	The HnswParam class
show-method	The KmknnIndex class
show-method	The KmknnParam class

-- V --

VptreeIndex	The VptreeIndex class
VptreeIndex-class	The VptreeIndex class
VptreeIndex_nodes	The VptreeIndex class
VptreeParam	The VptreeParam class
VptreeParam-class	The VptreeParam class

-- misc --

[[-method	The AnnoyParam class
[[-method	The BiocNeighborIndex class
[[-method	The BiocNeighborParam class
[[-method	The HnswParam class
[[<--method	The AnnoyParam class
[[<--method	The BiocNeighborParam class
[[<--method	The HnswParam class