structToolbox

DOI: 10.18129/B9.bioc.structToolbox    

This is the development version of structToolbox; to use it, please install the devel version of Bioconductor.

Some tools bult using the struct package

Bioconductor version: Development (3.11)

Extends the class templates provided by the struct package to provide PCA, PLS models with cross-validation, permutation testing etc. Also includes a suite of univariate tests and data processing models for building complete workflows.

Author: Gavin Rhys Lloyd

Maintainer: Gavin Rhys Lloyd <g.r.lloyd at bham.ac.uk>

Citation (from within R, enter citation("structToolbox")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("structToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("structToolbox")

 

HTML R Script Model objects
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PDF   Reference Manual
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Details

biocViews Software, WorkflowStep
Version 0.99.7
In Bioconductor since BioC 3.11 (R-4.0)
License GPL-3
Depends R (>= 4.0), struct(>= 0.99.7)
Imports ggplot2, ggthemes, grid, gridExtra, methods, scales, sp, stats
LinkingTo
Suggests agricolae, BiocStyle, car, covr, cowplot, e1071, emmeans, ggdendro, knitr, magick, nlme, pls, pmp, reshape2, ropls, rmarkdown, Rtsne, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package structToolbox_0.99.7.tar.gz
Windows Binary structToolbox_0.99.7.zip
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/structToolbox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/structToolbox
Package Short Url https://bioconductor.org/packages/structToolbox/
Package Downloads Report Download Stats

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