biobtreeR

DOI: 10.18129/B9.bioc.biobtreeR    

This is the development version of biobtreeR; to use it, please install the devel version of Bioconductor.

Using biobtree tool from R

Bioconductor version: Development (3.11)

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Citation (from within R, enter citation("biobtreeR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")

 

HTML R Script The biobtreeR users guide
PDF   Reference Manual
Text   LICENSE

Details

biocViews Annotation, Software
Version 0.99.22
In Bioconductor since BioC 3.11 (R-4.0)
License MIT + file LICENSE
Depends
Imports httr, httpuv, stringi, jsonlite, methods, utils
LinkingTo
Suggests BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL https://github.com/tamerh/biobtreeR
BugReports https://github.com/tamerh/biobtreeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biobtreeR_0.99.22.tar.gz
Windows Binary biobtreeR_0.99.22.zip
Mac OS X 10.11 (El Capitan) biobtreeR_0.99.22.tgz
Source Repository git clone https://git.bioconductor.org/packages/biobtreeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biobtreeR
Package Short Url https://bioconductor.org/packages/biobtreeR/
Package Downloads Report Download Stats

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