NPARC

DOI: 10.18129/B9.bioc.NPARC    

This is the development version of NPARC; to use it, please install the devel version of Bioconductor.

Non-parametric analysis of response curves for thermal proteome profiling experiments

Bioconductor version: Development (3.11)

Perform non-parametric analysis of response curves as described by Childs, Bach, Franken et al. (2019): Non-parametric analysis of thermal proteome profiles reveals novel drug-binding proteins.

Author: Dorothee Childs, Nils Kurzawa

Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>

Citation (from within R, enter citation("NPARC")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("NPARC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NPARC")

 

HTML R Script Analysing thermal proteome profiling data with the NPARC package
PDF   Reference Manual
Text   NEWS

Details

biocViews Proteomics, Software
Version 0.99.5
In Bioconductor since BioC 3.11 (R-4.0)
License GPL-3
Depends R (>= 4.0.0)
Imports dplyr, tidyr, BiocParallel, broom, MASS, rlang, magrittr, stats, methods
LinkingTo
Suggests testthat, devtools, knitr, rprojroot, rmarkdown, ggplot2, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NPARC_0.99.5.tar.gz
Windows Binary NPARC_0.99.5.zip
Mac OS X 10.11 (El Capitan) NPARC_0.99.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/NPARC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NPARC
Package Short Url https://bioconductor.org/packages/NPARC/
Package Downloads Report Download Stats

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