DOI: 10.18129/B9.bioc.Logolas    

This is the development version of Logolas; for the stable release version, see Logolas.

EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices

Bioconductor version: Development (3.11)

Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.

Author: Kushal Dey [aut, cre], Dongyue Xie [aut], Peter Carbonetto [ctb], Matthew Stephens [aut]

Maintainer: Kushal Dey <kkdey at uchicago.edu>

Citation (from within R, enter citation("Logolas")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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HTML R Script Guided Logolas Tutorial
PDF   Reference Manual
Text   NEWS


biocViews Alignment, Bayesian, SequenceMatching, Software, Visualization
Version 1.11.0
In Bioconductor since BioC 3.5 (R-3.4) (3 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports grid, SQUAREM, LaplacesDemon, stats, graphics, utils, ggplot2, gridBase, Biostrings
Suggests knitr, rmarkdown, BiocStyle, Biobase, devtools, xtable, gridExtra, RColorBrewer, seqLogo, ggseqlogo
URL https://github.com/kkdey/Logolas
BugReports http://github.com/kkdey/Logolas/issues
Depends On Me
Imports Me
Suggests Me universalmotif
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package Logolas_1.11.0.tar.gz
Windows Binary Logolas_1.11.0.zip
Mac OS X 10.11 (El Capitan) Logolas_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Logolas
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Logolas
Package Short Url https://bioconductor.org/packages/Logolas/
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