## ----style, echo = FALSE, results = 'asis'-------------------------------------------------------- BiocStyle::markdown() options(width=100, max.print=1000) knitr::opts_chunk$set( eval=as.logical(Sys.getenv("KNITR_EVAL", "TRUE")), cache=as.logical(Sys.getenv("KNITR_CACHE", "TRUE"))) ## ----setup, echo=FALSE, messages=FALSE, warnings=FALSE-------------------------------------------- suppressPackageStartupMessages({ library(DESeq2) library(limma) }) ## ----configure-test------------------------------------------------------------------------------- stopifnot( getRversion() >= '3.2' && getRversion() < '3.3', BiocInstaller::biocVersion() == "3.2" )