makeAnnotations {ann.Dmelanogaster.FlyBase.r51}R Documentation

Function used to produce the annotation datasets provided by the ann.Dmelanogaster.FlyBase.r51 package

Description

[TODO: Put a description]

Usage

  makeAnnotations(srcdir=".", destdir=".")

Arguments

srcdir Path to the directory where the GFF files have been downloaded.
destdir Path to the directory where to save the generated annotation datasets.

Details

Value

Author(s)

H. Pages

See Also

getAnnGenes, getAnnExonParents, getAnnExons, EXON2GENE, GENE_ID2NAMES, GFFutils

Examples

  # Here is how the annotation datasets coming with the
  # ann.Dmelanogaster.FlyBase.r51 package were made:
  #
  #   1) From a Unix-shell, run the scripts provided in inst/scripts in
  #      a 'tmpdir':
  #        download-gff.sh && extract-gff.sh && clean-gff.sh && check-gff.sh
  #
  #   2) From R, call 'makeAnnotations(tmpdir)' where 'tmpdir' is the 
  #      directory containing the "clean" GFF files produced at 1).

[Package ann.Dmelanogaster.FlyBase.r51 version 0.2.0 Index]