makeAnnotations {ann.Dmelanogaster.FlyBase.r51} | R Documentation |
[TODO: Put a description]
makeAnnotations(srcdir=".", destdir=".")
srcdir |
Path to the directory where the GFF files have been downloaded. |
destdir |
Path to the directory where to save the generated annotation datasets. |
H. Pages
getAnnGenes
,
getAnnExonParents
,
getAnnExons
,
EXON2GENE
,
GENE_ID2NAMES
,
GFFutils
# Here is how the annotation datasets coming with the # ann.Dmelanogaster.FlyBase.r51 package were made: # # 1) From a Unix-shell, run the scripts provided in inst/scripts in # a 'tmpdir': # download-gff.sh && extract-gff.sh && clean-gff.sh && check-gff.sh # # 2) From R, call 'makeAnnotations(tmpdir)' where 'tmpdir' is the # directory containing the "clean" GFF files produced at 1).