Afternoon Practicals (Labs)

Analyzing flow cytometry data in Bioconductor

 

Bioconductor for microarray quality assessment

 

Efficient string manipulation and genome-wide motif searching with Biostrings and the BSgenome data packages

 

Using the Databases within: a closer look at the new Annotation Packages

 

X:Map and exonmap tools for exon level annotation and exploration of Affymetrix exon array data

 

Getting Started with Lattice Graphics

 

Pairwise Sequence Alignments using Biostrings

 

Machine learning with Bioconductor: MLInterfaces

 

Gene Set Enrichment Analysis with R

 

rtracklayer: an R interface to existing genome browsers

 

ShortRead: tools for input and quality assessment of high-throughput sequence data

 

Fitting linear models to one-color arrays using limma

 

Presenting the results of an analysis - annotating data and creating useful output for one-color arrays