Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/HuBMAPR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: HuBMAPR

Version: 0.99.0

RVersion: 4.4

BiocVersion: 3.20

BuildCommand: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HuBMAPR

BuildTime: 0 minutes 14.41 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: HuBMAPR_20240904165354

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: HuBMAPR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file HuBMAPR/DESCRIPTION ... OK
* preparing HuBMAPR:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building hubmapr_vignettes.Rmd using rmarkdown

Quitting from lines 66-80 [main functions] (hubmapr_vignettes.Rmd)
Error: processing vignette 'hubmapr_vignettes.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached: [search.api.hubmapconsortium.org] SSL connection timeout
--- failed re-building hubmapr_vignettes.Rmd

SUMMARY: processing the following file failed:
  hubmapr_vignettes.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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