Package	Download_score
a4	761
a4Base	823
a4Classif	687
a4Core	700
a4Preproc	844
a4Reporting	559
ABAEnrichment	240
ABarray	809
abseqR	632
ABSSeq	775
acde	793
ACE	679
aCGH	1105
ACME	1010
ADaCGH2	801
ADAM	585
ADAMgui	544
ADAPT	219
adaptest	83
adductomicsR	409
ADImpute	625
adSplit	873
adverSCarial	426
Aerith	354
AffiXcan	653
affxparser	3098
affy	10216
affycomp	1009
AffyCompatible	356
affyContam	719
affycoretools	1206
affydata	29
AffyExpress	315
affyILM	723
affyio	10300
affylmGUI	966
affyPara	340
affypdnn	298
affyPLM	2191
affyQCReport	299
AffyRNADegradation	629
AffyTiling	176
AGDEX	699
aggregateBioVar	654
Agi4x44PreProcess	125
agilp	530
AgiMicroRna	893
AHMassBank	410
AIMS	1076
airpart	564
alabaster	428
alabaster.base	5659
alabaster.bumpy	424
alabaster.files	436
alabaster.mae	444
alabaster.matrix	5380
alabaster.ranges	5300
alabaster.sce	1701
alabaster.schemas	5165
alabaster.se	5281
alabaster.sfe	238
alabaster.spatial	486
alabaster.string	443
alabaster.vcf	444
ALDEx2	2311
alevinQC	721
AllelicImbalance	884
AlphaBeta	591
AlphaMissenseR	504
alpine	322
ALPS	86
AlpsNMR	717
alsace	187
altcdfenvs	911
AMARETTO	699
AMOUNTAIN	595
amplican	927
ampliQueso	195
AnalysisPageServer	126
anamiR	109
anansi	445
Anaquin	576
ANCOMBC	2783
AneuFinder	475
ANF	571
anglemania	507
animalcules	795
annaffy	984
AnnBuilder	78
anndataR	1511
annmap	688
annoLinker	342
annotate	22185
AnnotationDbi	47367
AnnotationFilter	12742
AnnotationForge	2918
AnnotationFuncs	234
AnnotationHub	15331
AnnotationHubData	1330
annotationTools	771
annotatr	1337
anota	694
anota2seq	701
antiProfiles	526
AnVIL	1203
AnVILAz	386
AnVILBase	876
AnVILBilling	466
AnVILGCP	420
AnVILPublish	454
AnVILVRS	92
AnVILWorkflow	279
APAlyzer	536
apComplex	824
apeglm	7160
APL	577
applera	47
appreci8R	705
aroma.light	2333
ArrayExpress	1030
ArrayExpressHTS	234
arrayMagic	142
arrayMvout	851
arrayQCplot	34
arrayQuality	745
arrayQualityMetrics	1150
ArrayTools	332
ArrayTV	256
ARRmNormalization	559
artMS	599
ASAFE	442
ASEB	537
ASGSCA	589
ASICS	779
asmn	45
ASpediaFI	165
ASpli	924
AssessORF	704
ASSET	647
ASSIGN	770
assorthead	18833
ASURAT	644
asuri	358
ATACCoGAPS	119
atacInferCnv	285
ATACseqQC	984
ATACseqTFEA	628
atena	595
AtlasRDF	89
atSNP	665
attract	968
AUCell	4433
augere.core	109
augere.de	115
augere.gsea	118
augere.screen	93
augere.solo	123
autonomics	698
Autotuner	82
AWAggregator	331
AWFisher	558
awst	519
BaalChIP	622
BAC	311
bacon	782
BADER	555
BadRegionFinder	664
BAGS	506
ballgown	1883
bambu	927
BamScale	118
bamsignals	2023
BANDITS	634
bandle	645
Banksy	1042
banocc	452
barbieQ	468
barcodetrackR	234
barmixR	78
basecallQC	462
BaseSpaceR	647
Basic4Cseq	737
BASiCS	994
BASiCStan	477
BasicSTARRseq	579
basilisk	5456
basilisk.utils	3393
batchCorr	386
BatChef	257
batchelor	5560
BatchQC	662
BatchSVG	404
Battlefield	356
BayesKnockdown	515
BayesPeak	255
BayesSpace	1134
bayNorm	643
baySeq	1167
BBCAnalyzer	777
BCRANK	924
bcSeq	471
BDMMAcorrect	185
beachmat	21591
beachmat.hdf5	580
beachmat.tiledb	278
beadarray	1511
beadarraySNP	447
BeadDataPackR	1065
BeadExplorer	39
BEARscc	238
BEAT	870
BEclear	602
bedbaser	403
beer	423
benchdamic	653
BenchHub	123
BERT	402
betaHMM	501
betr	206
betterChromVAR	284
bettr	468
BG2	417
bgafun	273
BgeeCall	764
BgeeDB	667
BGmix	285
bgx	531
BHC	293
BicARE	787
BiFET	531
BiGGR	323
bigmelon	742
bigmemoryExtras	155
bigPint	213
bim	41
BindingSiteFinder	666
bioassayR	676
Biobase	63656
biobroom	755
biobtreeR	433
Bioc.gff	366
bioCancer	842
BioCartaImage	445
BiocAzul	266
BiocBaseUtils	14954
BiocBook	459
BiocBuildReporter	280
BiocCaseStudies	335
BiocCheck	3141
biocDatasets	31
BiocDockerManager	113
BiocDuckDB	8
BiocFHIR	527
BiocFileCache	29516
BiocGenerics	74251
biocGraph	855
BiocHail	299
BiocHubsShiny	479
BiocInstaller	304
BiocIO	22644
BiocMaintainerApp	269
biocmake	6688
BiocNeighbors	15949
BiocOncoTK	353
BioCor	690
BiocParallel	60687
BiocPkgDash	296
BiocPkgTools	834
biocroxytest	361
BiocSet	792
BiocSingular	18201
BiocSklearn	532
BiocStyle	8533
biocthis	1073
BiocVersion	76878
biocViews	5834
BiocWorkflowTools	622
biodb	669
biodbChebi	267
biodbExpasy	112
biodbHmdb	183
biodbKegg	151
biodbLipidmaps	118
biodbMirbase	89
biodbNcbi	172
biodbNci	166
biodbUniprot	169
bioDist	837
BioGA	377
biomaRt	24672
BioMedR	44
biomformat	7699
BioMM	190
BioMVCClass	703
biomvRCNS	749
BioNAR	572
BioNERO	766
BioNet	1074
BioNetStat	224
BioPlex	45
BioQC	830
BioSeqClass	289
biosigner	675
Biostrings	57909
biosvd	195
BioTIP	685
biotmle	647
biovizBase	6517
BiRewire	519
birta	231
birte	151
biscuiteer	795
BiSeq	872
BitSeq	425
blacksheepr	658
blase	490
blima	698
BLMA	732
BloodGen3Module	519
bluster	10255
bnbc	773
bnem	605
BOBaFIT	545
borealis	524
BPRMeth	463
BRAIN	839
brainflowprobes	204
brainImageR	43
BrainSABER	125
BrainStars	226
branchpointer	777
breakpointR	665
BreastSubtypeR	506
brendaDb	565
BREW3R.r	468
BRGenomics	336
bridge	334
BridgeDbR	711
broadSeq	464
BrowserViz	650
BrowserVizDemo	46
BSgenome	14320
BSgenomeForge	581
bsseq	2478
BubbleTree	397
BufferedMatrix	611
BufferedMatrixMethods	584
bugsigdbr	702
BulkSignalR	606
BUMHMM	653
bumphunter	3911
BumpyMatrix	1183
BUS	698
BUScorrect	664
BUSpaRse	795
BUSseq	600
CaDrA	440
CAEN	448
CAFE	984
CAGEfightR	889
cageminer	572
CAGEr	918
CALIB	304
CalibraCurve	379
calm	398
CAMERA	1348
CAMTHC	94
CaMutQC	505
canceR	612
cancerclass	950
CancerInSilico	205
CancerMutationAnalysis	299
CancerSubtypes	308
CAnD	209
caOmicsV	281
cardelino	617
Cardinal	1157
CardinalIO	634
CARDspa	558
carnation	280
CARNIVAL	647
casper	744
CATALYST	1094
Category	2193
categoryCompare	906
CatsCradle	483
CausalR	578
cbaf	611
CBEA	168
cBioPortalData	1138
CBN2Path	320
CBNplot	559
cbpManager	552
CCAFE	485
ccfindR	501
ccImpute	520
ccmap	293
CCPlotR	489
CCPROMISE	597
ccrepe	528
CDI	530
celaref	734
celda	2010
CellaRepertorium	207
CellBarcode	641
cellbaseR	665
CellBench	767
cellGrowth	200
cellHTS	321
cellHTS2	610
CelliD	583
cellity	690
CellMapper	609
CellMentor	317
cellmig	443
cellmigRation	486
CellMixS	825
cellNexus	83
CellNOptR	855
cellscape	439
CellScore	293
CellTrails	706
cellTree	299
cellxgenedp	501
CEMiTool	772
censcyt	539
Cepo	694
ceRNAnetsim	466
CeTF	722
CexoR	832
CFAssay	464
cfdnakit	556
cfDNAPro	644
cfTools	268
CGEN	564
CGHbase	1125
CGHcall	1070
cghMCR	764
CGHnormaliter	732
CGHregions	706
CGRphylo2	95
ChAMP	1447
CHARGE	84
charm	282
ChemmineOB	877
ChemmineR	1649
CHETAH	658
chevreulPlot	359
chevreulProcess	472
chevreulShiny	491
ChIC	140
Chicago	709
chihaya	614
chimera	327
chimeraviz	857
ChIPanalyser	722
ChIPComp	554
chipenrich	815
ChIPexoQual	759
ChIPpeakAnno	1689
ChIPQC	1018
ChIPseeker	3660
chipseq	1403
ChIPseqR	877
ChIPSeqSpike	126
ChIPsim	805
ChIPXpress	586
chopsticks	696
chroGPS	280
Chromatograms	414
chromDraw	560
ChromHeatMap	786
ChromoViz	83
chromPlot	726
ChromSCape	770
chromstaR	485
chromswitch	242
chromVAR	2025
CHRONOS	581
cicero	948
cigarillo	15982
CIMICE	506
CINdex	358
circRNAprofiler	788
CircSeqAlignTk	457
cisPath	272
CiteFuse	691
CLAMP	124
ClassifyR	1015
cleanUpdTSeq	968
CleanUpRNAseq	525
cleaver	877
clevRvis	457
clippda	747
clipper	929
cliProfiler	554
cliqueMS	571
Clomial	541
Clonality	290
ClonalSim	305
clonotypeR	211
clst	635
clstutils	648
CluMSID	586
ClustAll	461
clustComp	564
clusterExperiment	970
ClusterFoldSimilarity	457
ClusterGVis	420
ClusterJudge	599
clusterProfiler	28950
clusterSeq	625
ClusterSignificance	580
clusterStab	723
clustifyr	792
ClustIRR	484
clustSIGNAL	435
CMA	857
cmapR	1085
cn.farms	878
cn.mops	1070
CNAnorm	637
CNEr	2496
CNORdt	550
CNORfeeder	766
CNORfuzzy	692
CNORode	627
CNPBayes	173
CNTools	736
CNVfilteR	642
CNVgears	143
cnvGSA	642
CNViz	461
CNVMetrics	573
CNVPanelizer	695
CNVRanger	701
CNVrd2	807
CNVtools	190
cobindR	237
CoCiteStats	626
COCOA	778
codelink	1037
CODEX	804
coexnet	188
CoGAPS	804
cogena	850
cogeqc	603
Cogito	498
coGPS	644
COHCAP	255
cola	904
comapr	514
combi	582
coMET	373
coMethDMR	618
compartmap	281
COMPASS	623
compcodeR	922
CompensAID	321
compEpiTools	856
CompGO	217
ComplexHeatmap	23566
CompoundDb	992
ComPrAn	426
compSPOT	377
CONCERTDR	8
conclus	102
concordexR	523
condcomp	34
condiments	663
CONFESS	743
consensus	531
ConsensusClusterPlus	3808
consensusDE	371
consensusOV	743
consensusSeekeR	707
consICA	569
CONSTANd	504
contiBAIT	417
conumee	799
convert	813
copa	698
COPDSexualDimorphism	47
copynumber	485
CopyNumber450k	104
CopyNumberPlots	673
CopywriteR	310
Coralysis	427
coRdon	845
CoRegFlux	79
CoRegNet	349
CoreGx	1026
Cormotif	658
CorMut	160
coRNAi	177
CorNetto	6
corral	599
CORREP	299
coseq	766
CoSIA	494
cosmiq	640
cosmo	141
cosmoGUI	85
cosmosR	579
COSNet	571
COTAN	567
CountClust	191
countsimQC	873
covEB	559
CoverageView	707
covRNA	612
CPSM	445
cpvSNP	757
cqn	928
CrcBiomeScreen	302
CRImage	932
CRISPRball	438
crisprBase	661
crisprBowtie	588
crisprBwa	403
crisprDesign	687
crisprScore	688
CRISPRseek	786
crisprseekplus	249
crisprShiny	442
CrispRVariants	895
crisprVerse	473
crisprViz	642
crlmm	1227
CrossICC	56
crossmeta	364
crumblr	430
crupR	482
CSAR	740
csaw	1326
csdR	426
CSOA	375
CSSP	224
CSSQ	633
ctc	822
CTdata	581
CTDquerier	811
ctdR	0
CTexploreR	557
ctgGEM	107
cTRAP	760
ctsGE	636
CTSV	465
cummeRbund	658
CuratedAtlasQueryR	366
customCMPdb	527
customProDB	660
CVE	127
cyanoFilter	572
cycle	691
cydar	754
cypress	494
CySA	14
CytoDx	500
cytofast	89
cytofkit	148
CyTOFpower	499
cytofQC	475
CytoGLMM	504
cytoKernel	534
cytolib	3643
cytomapper	1007
CytoMDS	501
cytoMEM	519
CytoML	1404
CytoPipeline	562
CytoPipelineGUI	448
CytoTree	96
cytoviewer	579
dada2	3900
dagLogo	913
daMA	751
DAMEfinder	753
damidBind	405
DaMiRseq	850
Damsel	500
dandelionR	363
DAPAR	803
DaparToolshed	100
dar	493
DART	731
DASC	18
DASiR	112
dasper	134
DAssemble	77
DAVIDQuery	124
daVis	120
DBChIP	267
dbSequence	83
dcanr	769
DCATS	456
dce	263
dcGSA	474
DChIPRep	219
ddCt	792
ddgraph	159
ddPCRclust	597
dearseq	647
debCAM	322
debrowser	758
decemedip	346
DECIPHER	4603
deco	210
DEComplexDisease	198
decompTumor2Sig	616
DeconRNASeq	686
decontam	2805
decontX	1039
DeconvoBuddies	510
deconvR	668
decoupleR	3357
DEDS	351
DeeDeeExperiment	482
DeepBlueR	278
DeepPINCS	483
deepSNV	1047
DeepTarget	446
DEFormats	863
DegCre	484
DegNorm	659
DEGraph	520
DEGreport	1270
DEGseq	855
DelayedArray	56450
DelayedDataFrame	623
DelayedMatrixStats	19524
DelayedRandomArray	483
DelayedTensor	552
DELocal	508
deltaCaptureC	534
deltaGseg	572
DeMAND	435
DeMixT	702
demuxmix	532
demuxSNP	537
DenoIST	337
densvis	1058
DEP	1037
DepecheR	598
DepInfeR	505
DeProViR	44
DEqMS	901
derfinder	1351
derfinderHelper	1058
derfinderPlot	908
DEScan2	806
DESeq	726
DESeq2	31845
DEsingle	663
DESpace	705
destiny	1822
DEsubs	770
DEWSeq	697
DExMA	565
DEXSeq	2563
dexus	250
DFP	720
DFplyr	440
DIAlignR	181
DiffBind	2193
diffcoexp	554
diffcyt	1016
DifferentialRegulation	553
diffGeneAnalysis	524
diffHic	962
DiffLogo	586
diffloop	324
diffuStats	590
diffUTR	617
diggit	582
Dino	581
dinoR	476
dir.expiry	12538
Director	190
DirichletMultinomial	6146
discordant	608
DiscoRhythm	677
distinct	707
dittoSeq	1759
divergence	543
dks	510
DMCFB	625
DMCHMM	631
dmGsea	451
DMRcaller	870
DMRcate	1707
DMRforPairs	326
DMRScan	775
dmrseq	992
DNABarcodeCompatibility	452
DNABarcodes	627
DNAcopy	4916
DNAcycP2	418
dnaEPICO	163
DNAfusion	639
DNaseR	64
DNAshapeR	828
DNEA	412
domainsignatures	185
dominatR	351
DominoEffect	625
dominoSignal	484
doppelgangR	711
DOQTL	226
Doscheda	729
DOSE	28334
doseR	660
DOtools	372
DOTSeq	371
doubletrouble	617
dpeak	145
drawProteins	627
dreamlet	779
DRIMSeq	1046
DriverNet	542
DropletUtils	3818
drugfindR	340
drugTargetInteractions	507
DrugVsDisease	723
dSimer	144
DspikeIn	492
DSS	1521
dStruct	500
DTA	555
dualKS	316
DuckDBArray	36
DuckDBDataFrame	26
DuckDBGRanges	31
DuckDBSpatial	17
Dune	477
DupChecker	129
DuplexDiscovereR	433
dupRadar	658
dyebias	839
DynDoc	2342
easier	696
EasyCellType	545
easylift	475
EasyqpcR	229
easyreporting	588
easyRNASeq	842
EBarrays	1088
EBcoexpress	729
EBImage	3887
EBSEA	508
EBSeq	1022
EBSeqHMM	251
ecolitk	885
EDASeq	2422
edd	142
EDDA	221
edge	742
edgeR	31065
EDIRquery	448
eds	597
eegc	287
EGAD	621
EGSEA	917
eiR	650
eisa	389
eisaR	723
ELBOW	224
ELMER	721
ELViS	454
EMDomics	656
EMMA	122
EmpiricalBrownsMethod	551
EMTscore	90
ENCODExplorer	172
EnhancedVolcano	7614
enhancerHomologSearch	605
EnMCB	638
ENmix	943
EnrichDO	467
EnrichedHeatmap	1773
EnrichmentBrowser	1235
enrichplot	29749
enrichTF	221
enrichViewNet	502
ensembldb	10971
ensemblVEP	314
ENVISIONQuery	192
epialleleR	630
EpiCompare	596
epidecodeR	555
EpiDISH	1585
epigenomix	782
epigraHMM	728
epihet	141
EpiMix	619
epimutacions	618
epiNEM	687
EpipwR	328
epiregulon	477
epiregulon.extra	503
epiRomics	264
epiSeeker	375
epistack	640
epistasisGA	503
EpiTxDb	654
epivizr	915
epivizrChart	749
epivizrData	739
epivizrServer	584
epivizrStandalone	662
erccdashboard	819
erma	417
ERSSA	655
esATAC	898
escape	989
escheR	685
esetVis	734
eudysbiome	769
evaluomeR	595
EventPointer	699
EWCE	819
ExCluster	464
ExiMiR	806
exomeCopy	586
exomePeak	281
exomePeak2	264
exonmap	89
ExperimentHub	10831
ExperimentHubData	1098
ExperimentSubset	576
explorase	183
ExploreModelMatrix	750
exploreSE	34
ExpoRiskR	276
ExpressionAtlas	685
ExpressionView	282
exprExternal	34
externalVector	80
extraChIPs	682
fabia	787
facopy	212
factDesign	758
factR	485
faers	573
FamAgg	680
famat	646
Fancy	14
farms	371
fastLiquidAssociation	622
FastqCleaner	741
fastRanges	352
fastreeR	526
fastseg	1727
fbat	94
FCBF	229
fCCAC	774
fCI	594
fcoex	184
fcScan	540
fdrame	613
FEAST	749
FeatSeekR	422
fedup	532
FELLA	822
FEM	196
fenr	500
ffpe	732
fgga	544
FGNet	784
fgsea	28701
FilterFFPE	625
findIPs	461
FindIT2	633
FindMyFriends	216
FinfoMDS	323
FISHalyseR	515
fishash	56
fishpond	1228
FitHiC	414
flagme	661
FLAMES	646
flipflop	189
flowAI	1132
flowBeads	725
flowBin	684
flowcatchR	866
flowCHIC	695
flowCL	230
flowClean	823
flowClust	2075
flowCore	4289
flowCut	743
flowCyBar	483
flowDensity	945
flowFit	189
flowFlowJo	135
flowFP	1040
flowGate	511
flowGraph	516
flowMap	345
flowMatch	802
flowMeans	956
flowMerge	751
flowPeaks	736
flowPhyto	117
flowPloidy	582
flowPlots	522
flowQ	265
flowQB	189
FlowRepositoryR	180
FlowSOM	1920
flowSpecs	707
flowSpy	81
flowStats	1573
flowTime	663
flowTrans	694
flowType	271
flowUtils	374
flowViz	2153
flowVS	786
flowWorkspace	2532
fmcsR	931
fmrs	440
fobitools	601
focalCall	159
FoldGO	241
FourCSeq	294
fourSynergy	361
fRagmentomics	357
fraq	279
FRASER	806
frenchFISH	350
FRGEpistasis	466
frma	892
frmaTools	711
FScanR	109
FunChIP	259
FunciSNP	305
funOmics	352
funtooNorm	651
FuseSOM	563
G4SNVHunter	448
GA4GHclient	602
GA4GHshiny	574
gaga	788
gage	1713
gaggle	377
gaia	230
GAPGOM	140
GAprediction	471
garfield	437
GARS	577
GateFinder	556
gatom	543
gaucho	131
GBScleanR	510
gcapc	859
gcatest	549
gCMAP	239
gCMAPWeb	254
GCPtools	607
gCrisprTools	911
gcrma	2127
GCSConnection	70
GCSFilesystem	56
GCSscore	205
GDCRNATools	891
gDNAx	522
gDR	408
gDRcore	462
gDRimport	536
gDRstyle	492
gDRutils	441
GDSArray	617
gdscloud	7
gdsfmt	3191
GeDi	397
geecc	177
GEM	550
gemini	495
gemma.R	590
genArise	637
genbankr	396
GENE.E	100
gene2pathway	81
GeneAccord	165
GeneAnswers	309
geneAttribution	609
GeneBreak	775
geneClassifiers	615
geneClusterPattern	6
GeneExpressionSignature	805
genefilter	15109
genefu	1357
GeneGA	356
GeneGeneInteR	323
GeneGroupAnalysis	46
GeneMeta	1029
GeneNetworkBuilder	923
GeneOverlap	1521
geneplast	704
geneplotter	4619
GeneR	115
geneRecommender	643
GeneRegionScan	1036
GeneRfold	37
geneRxCluster	619
GeneSelectMMD	734
GeneSelector	247
GENESIS	1246
GeneSpring	98
GeneStructureTools	685
geNetClassifier	825
GeneticsBase	87
GeneticsDesign	188
GeneticsPed	538
GeneTonic	818
GeneTraffic	86
GeneTS	72
geneXtendeR	631
GENIE3	2154
genoCN	319
GenoGAM	244
genomation	1578
GenomAutomorphism	566
GenomeBase	31
GenomeGraphs	294
GenomeInfoDb	40177
genomeIntervals	834
genomes	536
GenomicAlignments	26582
GenomicCoordinates	269
GenomicDataCommons	1716
GenomicDistributions	716
GenomicFeatures	19163
GenomicFiles	1613
genomicInstability	521
GenomicInteractionNodes	490
GenomicInteractions	1211
GenomicOZone	602
GenomicPlot	550
GenomicRanges	56129
GenomicScores	1299
GenomicSuperSignature	734
GenomicTuples	753
Genominator	287
genoset	301
genotypeeval	247
GenoView	70
genphen	217
GenProSeq	382
GenRank	110
GenVisR	979
GeoDiff	598
GEOexplorer	224
GEOfastq	344
GEOmetadb	873
geomeTriD	492
GeomxTools	904
GEOquery	15498
GEOsearch	87
GEOsubmission	630
GeoTcgaData	588
gep2pep	502
gesel	86
gespeR	354
getDEE2	455
geva	524
GEWIST	490
GExPipe	122
geyser	410
gff3Plotter	40
gg4way	516
GGBase	370
ggbio	3301
ggcyto	1934
ggkegg	860
ggmanh	620
ggmsa	1138
GGPA	538
ggsc	506
ggseqalign	379
ggspavis	991
GGtools	435
ggtree	34055
ggtreeDendro	427
ggtreeExtra	2607
ggtreeSpace	385
GIGSEA	466
ginmappeR	386
gINTomics	461
girafe	641
GISPA	253
GLAD	921
GladiaTOX	570
Glimma	1633
glmGamPoi	6903
glmSparseNet	708
GlobalAncova	1886
globalSeq	568
globaltest	2684
GloScope	507
glycoTraitR	299
gmapR	607
GmicR	619
gmoviz	736
GMRP	673
GNET2	387
GNOSIS	498
GOaGO	344
goatea	414
goCluster	33
GOexpress	857
GOfan	290
GOfuncR	723
GOFunction	288
GoogleGenomics	143
GOpro	736
goProfiles	883
GOSemSim	27094
goseq	2175
GOSim	366
goSorensen	489
goSTAG	730
GOstats	2235
GOsummaries	321
GOTHiC	973
goTools	702
GPA	414
gpart	193
GPlinksR	67
gpls	884
gprege	232
gpuMagic	259
gQTLBase	217
gQTLstats	222
GrafGen	499
gramm4R	55
GRaNIE	824
granulator	204
graper	519
graph	25374
GraphAlignment	537
GraphAT	819
GraphExperiment	336
graphite	6792
GraphPAC	339
GRENITS	531
GreyListChIP	1760
GRmetrics	705
groHMM	917
growkar	11
GRridge	245
GSABenchmark	280
GSALightning	549
GSAR	829
GSCA	663
gscreend	607
GSEABase	13107
GSEABenchmarkeR	680
GSEAlens	52
GSEAlm	866
GSEAmining	516
gsean	584
GSgalgoR	556
GSReg	653
GSRI	759
GSVA	12445
gtrellis	800
GUIDEseq	1002
Guitar	829
gVenn	396
Gviz	4415
GWAS.BAYES	546
gwascat	1326
GWASTools	1438
gwasurvivr	591
GWENA	657
gypsum	5099
h5mread	14612
h5vc	1096
hammers	308
hapFabia	706
Harman	811
HarmonizR	424
Harshlight	477
hca	231
HCABrowser	91
HCAExplorer	55
HCAMatrixBrowser	33
HCsnip	171
HDF5Array	19802
HDTD	458
hdxmsqc	525
heatmaps	954
Heatplus	972
HelloRanges	782
HELP	745
HEM	750
hermes	691
HERON	490
Herper	386
hexbin	149
HGC	453
hiAnnotator	415
HIBAG	729
HicAggR	512
HiCaptuRe	406
HiCBricks	820
HiCcompare	982
HiCDCPlus	608
HiCDOC	608
HiCExperiment	613
HiContacts	713
HiCool	296
HiCParser	383
HiCPotts	365
hicrep	77
hicVennDiagram	467
hierGWAS	590
hierinf	375
HilbertCurve	784
HilbertVis	825
HilbertVisGUI	309
HiLDA	694
hipathia	821
HIPPO	482
hiReadsProcessor	371
HIREewas	548
HiSpaR	237
HistoImagePlot	320
HiTC	998
hmdbQuery	475
HMMcopy	929
HoloFoodR	458
hoodscanR	552
hopach	1137
HPAanalyze	726
hpar	1157
HPAStainR	83
HPiP	547
HTqPCR	911
HTSanalyzeR	297
HTSeqGenie	182
htSeqTools	277
HTSFilter	981
HuBMAPR	416
HubPub	995
HumanTranscriptomeCompendium	243
hummingbird	546
HVP	378
HybridExpress	480
HybridMTest	637
hypeR	514
hyperdraw	690
hypergraph	763
iASeq	466
iasva	600
iBBiG	465
Ibex	370
ibh	560
iBMQ	447
iCARE	579
Icens	1023
icetea	686
iCheck	658
iChip	741
iClusterPlus	794
iCNV	545
iCOBRA	1027
ideal	930
IdeoViz	735
idiogram	974
IdMappingAnalysis	227
IdMappingRetrieval	194
idpr	613
idr2d	633
IFAA	385
iFlow	55
igblastr	764
iGC	619
IgGeneUsage	573
igvR	831
igvShiny	550
IHW	1738
illuminaio	4127
ILoReg	612
ImageArray	344
imageFeatureTCGA	266
imageHTS	387
imageTCGA	380
imageTCGAutils	326
IMAS	455
imcRtools	887
Imetagene	175
IMMAN	471
immApex	837
immGLIPH	98
immLynx	296
immReferent	398
ImmuneSpaceR	275
immunoClust	718
immunogenViewer	362
immunotation	460
iModMix	313
IMPCdata	422
ImpulseDE	84
ImpulseDE2	120
impute	14255
INDEED	423
iNETgrate	535
infercnv	2517
infinityFlow	561
Informeasure	438
InPAS	938
INPower	558
inSilicoDb	168
inSilicoMerging	116
INSPEcT	949
INTACT	441
InTAD	666
intansv	778
interacCircos	398
InteractionSet	2340
InteractiveComplexHeatmap	992
interactiveDisplay	723
interactiveDisplayBase	2909
InterCellar	586
IntEREst	771
InterMineR	323
IntOMICS	72
IntramiRExploreR	542
inveRsion	205
IONiseR	812
iontree	136
iPAC	383
iPath	449
ipdDb	574
IPO	666
IPPD	219
IRanges	67938
IRISFGM	148
IrisSpatialFeatures	41
ISAnalytics	658
iscream	436
iSEE	1090
iSEEde	531
iSEEfier	438
iSEEhex	529
iSEEhub	599
iSEEid	106
iSEEindex	495
iSEEpathways	517
iSEEtree	513
iSEEu	697
iSeq	560
ISLET	529
islify	387
iSNetwork	51
isobar	924
IsoBayes	490
IsoCorrectoR	544
IsoCorrectoRGUI	468
IsoformSwitchAnalyzeR	1183
IsoGeneGUI	376
ISoLDE	467
isomiRs	816
iSPlot	51
ITALICS	738
iterativeBMA	623
iterativeBMAsurv	514
iterClust	191
iteremoval	137
IVAS	736
ivygapSE	538
IWTomics	640
JASPAR2018	22
jazzPanda	515
jmosaics	118
joda	227
JunctionSeq	176
jvecfor	256
karyoploteR	1822
katdetectr	581
KBoost	375
KCsmart	816
kebabs	891
KEGGemUP	56
KEGGgraph	6790
KEGGlincs	682
keggorth	52
keggorthology	934
KEGGprofile	231
KEGGREST	45537
KEGGSOAP	124
kimod	113
KinSwingR	527
kissDE	612
kmcut	406
KnowSeq	582
knowYourCG	338
koinar	404
LACE	697
LACHESIS	390
lapmix	396
LBE	767
lcmsPlot	335
ldblock	628
LEA	1279
leapR	272
LedPred	497
lefser	1166
lemur	564
les	711
levi	515
lfa	632
Lheuristic	338
limma	44655
limmaGUI	904
limpa	483
limpca	489
LimROTS	437
LINC	145
LineagePulse	200
lineagespot	445
LinkHD	576
linkSet	194
Linnorm	888
LinTInd	265
lionessR	673
LIPIDIFy	2
lipidr	673
LipidTrend	338
LiquidAssociation	653
lisaClust	663
lmdme	664
LMGene	337
lncRna	302
LOBSTAHS	593
loci2path	607
logicFS	702
logitT	318
Logolas	120
lol	160
LOLA	888
looking4clusters	371
LoomExperiment	1001
LowMACA	259
LPE	689
LPEadj	313
lpNet	549
lpsymphony	1859
LRBaseDbi	570
LRcell	557
LRDE	247
lumi	2157
lute	114
LVSmiRNA	251
LymphoSeq	697
M3C	952
M3D	216
M3Drop	902
m6Aboost	554
maanova	419
Maaslin2	1550
maaslin3	711
Macarron	449
macat	495
maCorrPlot	649
MACPET	176
MACSQuantifyR	500
MACSr	541
maDB	158
made4	1081
MADSEQ	421
maftools	3419
MAGAR	553
MAGeCKFlute	344
magpie	564
magrene	505
MAI	549
maigesPack	479
MAIT	617
makecdfenv	1064
makePlatformDesign	58
MANOR	672
manta	269
MantelCorr	601
MAPFX	480
mAPKL	312
maPredictDSC	574
mapscape	535
mariner	481
markeR	440
marr	583
marray	2984
martini	578
maser	792
maSigPro	1086
maskBAD	700
MassArray	541
massiR	739
MassSpecWavelet	2887
MAST	3512
mastR	629
matchBox	517
matchprobes	112
MatrixGenerics	52047
MatrixQCvis	637
MatrixRider	684
matter	987
MaxContrastProjection	103
MBAmethyl	438
MBASED	734
MBCB	565
MBECS	530
mbkmeans	1233
mbOmic	57
mBPCR	772
MBQN	555
mbQTL	419
MBttest	660
mcaGUI	223
MCbiclust	836
MCRestimate	244
mCSEA	776
mdgsa	249
mdp	593
mdqc	644
MDSvis	275
MDTS	515
MEAL	835
MeasurementError.cor	510
MEAT	747
MEB	598
MEDIPS	915
MEDME	725
megadepth	583
MEIGOR	639
Melissa	373
MeLSI	275
memes	708
MergeMaid	338
Mergeomics	641
MeSHDbi	835
meshes	722
meshr	828
MeSHSim	71
MesKit	727
messina	677
metaArray	320
Metab	291
metabCombiner	598
metabinR	555
MetaboAnnotation	729
MetaboAnnotatoR	285
MetaboCoreUtils	3850
MetaboDynamics	442
metabolomicsWorkbenchR	641
metabom8	324
metabomxtr	625
MetaboSignal	804
metaCCA	484
MetaCyto	564
MetaDICT	376
metagene	462
metagene2	783
metagenomeFeatures	202
metagenomeSeq	2721
MetaGxOvarian	14
metahdep	510
metaMS	816
MetaNeighbor	429
MetaPathNet	68
MetaPhOR	529
metapod	8647
metapone	574
MetaProViz	341
metaSeq	740
metaseqR	294
metaseqR2	764
metavizr	228
MetaVolcanoR	179
metaX	49
MetCirc	645
MethCP	161
methimpute	681
methInheritSim	650
methodical	445
MethPed	855
MethReg	557
methrix	788
MethTargetedNGS	557
methVisual	251
methyAnalysis	319
MethylAid	894
methylCC	777
methylclock	741
methylGSA	786
methyLImp2	441
methylInheritance	722
methylKit	1660
MethylMix	787
methylMnM	854
methylPipe	831
methylscaper	630
MethylSeekR	927
methylSig	651
methylumi	2513
methyvim	123
MetID	513
MetMashR	479
MetNet	786
mfa	375
Mfuzz	2147
MGFM	736
MGFR	623
MGnifyR	536
mgsa	652
mia	2796
miaDash	412
miaSim	532
miaTime	507
miaViz	926
MiChip	681
microbiome	2982
microbiomeDASim	510
microbiomeExplorer	609
microbiomeMarker	497
MicrobiomeProfiler	511
MicrobiotaProcess	1056
microRNA	1434
microSTASIS	124
MICSQTL	497
midasHLA	472
MIGSA	251
miloR	1908
mimager	667
MIMOSA	271
mina	492
MineICA	625
minet	1409
minfi	3714
MinimumDistance	941
MiPP	726
miQC	730
MIRA	718
MiRaGE	941
miRBaseConverter	766
miRcomp	760
mirIntegrator	755
MIRit	499
miRLAB	703
miRmine	309
miRNAmeConverter	553
miRNApath	573
miRNAtap	753
miRSM	711
miRsponge	71
miRspongeR	608
Mirsynergy	168
mirTarRnaSeq	615
missMethyl	1816
missRows	574
mist	397
mistyR	585
mitch	563
mitoClone2	550
mitology	471
mitoODE	159
mixOmics	5181
MLInterfaces	1417
mlm4omics	45
MLP	959
MLSeq	783
MMAPPR2	122
MMDiff	165
MMDiff2	800
mmgmos	50
mmnet	119
MmPalateMiRNA	258
MMUPHin	687
mnem	750
moanin	473
mobileRNA	466
MobilityTransformR	110
MODA	538
ModCon	411
Modstrings	700
MOFA	88
MOFA2	1791
MOGAMUN	456
mogsa	873
MoleculeExperiment	459
MOMA	697
monaLisa	864
monocle	4346
Moonlight2R	581
MoonlightR	815
MoPS	169
mosaics	961
mosbi	399
MOSClip	471
mosdef	748
MOSim	789
Motif2Site	592
motifbreakR	722
motifcounter	421
MotifDb	1686
motifmatchr	2469
MotifPeeker	366
motifRG	249
motifStack	1561
motifTestR	511
MotIV	314
MouseFM	531
MPAC	381
MPFE	442
mpra	768
MPRAnalyze	567
MQmetrics	136
mQTL.NMR	154
msa	2822
MSA2dist	578
MsBackendMassbank	536
MsBackendMassIVE	64
MsBackendMetaboLights	396
MsBackendMetabolomicsWorkbench	61
MsBackendMgf	1235
MsBackendMsp	781
MsBackendRawFileReader	541
MsBackendSql	535
MsCoreUtils	4930
MsDataHub	604
MSEADbi	38
MsExperiment	2170
MsFeatures	2397
msgbsR	619
MSGFgui	226
MSGFplus	187
msImpute	605
mslp	349
msmsEDA	757
msmsTests	797
MSnbase	5178
MSnID	1027
mspms	507
MSPrep	434
msPurity	634
msqrob2	829
MsQuality	559
MsStash	72
MSstats	1385
MSstatsBig	387
MSstatsBioNet	418
MSstatsConvert	1077
MSstatsLiP	621
MSstatsLOBD	430
MSstatsPTM	775
MSstatsQC	602
MSstatsQCgui	414
MSstatsResponse	418
MSstatsSampleSize	176
MSstatsShiny	524
MSstatsTMT	897
MSstatsTMTPTM	47
MSTree	75
MTseeker	69
MuData	578
Mulcom	715
MultiAssayExperiment	9291
MultiAssaySpatialExperiment	12
MultiBaC	517
multiClust	691
multicrispr	655
MultiDataSet	2649
multiGSEA	643
multiHiCcompare	831
MultiMed	581
multiMiR	1366
MultimodalExperiment	561
MultiOmicsBridge	114
multiOmicsViz	249
MultipleAlignment	132
multipletR	0
multipointR	60
MultiRNAflow	541
multiscan	694
multiSight	133
multistateQTL	438
multiWGCNA	525
multtest	14174
mumosa	601
MungeSumstats	1116
muscat	1717
muscle	934
musicatk	725
MutationalPatterns	1095
mutscan	439
MutSeqR	376
MVCClass	675
mvGST	144
MWASTools	772
mygene	930
myvariant	700
mzID	4398
mzR	5344
NADfinder	856
NanoMethViz	661
NanoStringDiff	629
NanoStringNCTools	1033
NanoStringQCPro	262
nanotatoR	192
NanoTube	602
NarrowPeaks	239
NBAMSeq	555
NBSplice	171
ncdfFlow	2347
ncGTW	576
NCIgraph	450
ncRNAtools	569
ndexr	499
neaGUI	117
nearBynding	411
Nebulosa	1899
NeighborNet	191
nem	475
nempi	510
NetActivity	510
netbenchmark	135
netbiov	313
netboost	470
netboxr	125
netDx	159
nethet	690
netOmics	135
NetPathMiner	603
netprioR	437
netReg	100
netresponse	746
NetSAM	677
netSmooth	714
networkBMA	239
netZooR	246
NeuCA	169
NewWave	531
NGScopy	163
ngsReports	691
nipalsMCIA	572
nnNorm	683
nnSVG	694
NOISeq	1168
nondetects	661
NoRCE	630
normalize450K	652
NormalyzerDE	796
NormqPCR	739
normr	865
normScore	7
notame	424
notameStats	342
notameViz	381
NPARC	597
npGSEA	759
NTW	537
nucleoSim	630
nucleR	949
nuCpos	532
nudge	220
nullranges	719
NuPoP	645
NxtIRFcore	147
OAtools	285
occugene	528
OCplus	866
octad	548
ODER	112
odseq	518
OGRE	549
OGSA	173
oligo	3919
oligoClasses	3276
OLIN	908
OLINgui	693
omada	325
OmaDB	651
omicade4	816
OmicCircos	773
omicplotR	503
omicRexposome	722
omicsGMF	391
OmicsLonDA	194
OmicsMarkeR	153
OmicsMLRepoR	305
OMICsPCA	696
omicsPrint	804
omicsViewer	572
Omixer	487
OmnipathR	2420
ompBAM	516
omXplore	458
Onassis	156
oncomix	583
oncoscanR	501
OncoScore	626
OncoSimulR	661
oneChannelGUI	277
oneSENSE	164
onlineFDR	439
ontoCAT	184
ontoProc	763
ontoProc2	78
ontoTools	148
openCyto	1842
openPrimeR	770
openPrimeRui	210
OpenStats	411
OperaMate	82
oposSOM	686
oppar	798
oppti	195
optimalFlow	504
OPWeight	578
OrderedList	732
ORFhunteR	558
ORFik	925
Organism.dplyr	505
OrganismDbi	3518
orthogene	1195
orthos	520
OSAT	649
Oscope	715
OSTA.data	458
OTUbase	805
OutlierD	283
OUTRIDER	918
OutSplice	567
OVESEG	605
PAA	863
packFinder	611
padma	590
PADOG	862
pageRank	483
PAIRADISE	604
paircompviz	580
pairedGSEA	491
pairkat	530
pairseqsim	23
pamr	144
pandaR	825
panelcn.mops	697
PAnnBuilder	196
PanomiR	579
panoramic	107
panp	876
PANR	678
PanViz	148
PanVizGenerator	172
PAPi	215
parati	312
pareg	124
parglms	652
parody	704
partCNV	265
PAST	627
Path2PPI	632
pathifier	602
pathlinkR	538
pathMED	241
PathNet	591
PathoStat	676
pathprint	111
pathRender	724
pathVar	265
pathview	5667
pathwayPCA	634
PathwaySplice	166
PatientGeneSets	51
paxtoolsr	260
Pbase	235
pbcmc	104
pcaExplorer	1003
pcaGoPromoter	192
pcaMethods	7213
PCAN	728
PCAtools	1731
pcot2	386
PCpheno	391
pcxn	173
PDATK	639
pdInfoBuilder	978
pdmclass	282
PeacoQC	837
peakCombiner	364
peakPantheR	589
PECA	655
peco	580
Pedixplorer	487
pengls	401
PepSetTest	395
PepsNMR	600
pepStat	737
pepVet	14
pepXMLTab	547
PERFect	169
periodicDNA	711
perturbatr	115
pfamAnalyzeR	631
PFP	111
PGA	312
pgca	404
pgen2gds	73
PGSEA	451
pgUtils	90
pgxRpi	336
phantasus	745
phantasusLite	427
PharmacoGx	1129
phemd	243
phenoDist	180
PhenoGeneRanker	335
phenomis	444
phenopath	785
phenoTest	913
PhenStat	380
philr	799
PhIPData	588
phosphonormalizer	500
PhosR	885
phylobar	119
PhyloProfile	615
phyloseq	8121
Pi	335
piano	1318
PICB	490
pickgene	566
PICS	557
Pigengene	752
PING	546
PinPath	134
pint	184
pipeComp	693
pipeFrame	614
PIPETS	372
Pirat	461
PIUMA	503
pkgDepTools	371
plaid	331
planet	716
planttfhunter	481
plasmut	378
plateCore	306
plethy	340
plgem	878
plier	780
PlinkMatrix	322
PloGO2	163
plotgardener	793
plotGrouper	506
PLPE	648
plrs	261
PLSDAbatch	479
plw	290
plyinteractions	589
plyranges	1802
plyxp	592
pmm	471
pmp	694
PMScanR	374
PoDCall	485
podkat	945
poem	464
pogos	624
polyester	455
Polyfit	181
polyICSFlow	7
PolySTest	440
Polytect	361
POMA	703
posDemux	359
POST	107
PostChicago	74
postNet	438
PoTRA	123
PowerExplorer	92
powerTCR	698
POWSC	575
ppcseq	567
PPInfer	605
ppiStats	430
pqsfinder	857
prada	354
pram	709
prebs	736
preciseTAD	739
PrecisionTrialDrawer	121
PREDA	879
predictionet	203
preprocessCore	18543
primirTSS	727
PrInCE	596
Prize	117
proActiv	734
proBAMr	722
proBatch	625
PROcess	714
procoil	819
ProCoNA	194
proDA	864
proFIA	210
profileplyr	770
profileScoreDist	568
progeny	1742
projectR	737
pRoloc	1400
pRolocGUI	796
PROMISE	648
PRONE	545
PROPER	725
PROPS	659
Prostar	692
prot2D	204
proteasy	111
ProteinBatcher	10
proteinProfiles	476
ProteoDisco	658
ProteomicsAnnotationHubData	182
ProteoMM	592
proteoQC	190
protGear	603
ProtGenerics	13028
PSEA	353
psichomics	832
PSICQUIC	243
PSMatch	3732
psygenet2r	385
ptairMS	630
PTMods	1067
PubScore	110
pulsedSilac	121
puma	1033
PureCN	1082
pvac	669
pvca	865
Pviz	703
pwalign	9244
PWMEnrich	1028
pwOmics	433
pwrEWAS	139
qckitfastq	198
qcmetrics	940
QDNAseq	1130
QFeatures	4411
QFeaturesGUI	6
qmtools	554
qpcrNorm	735
qpgraph	1233
qPLEXanalyzer	716
qrqc	339
QRscore	406
qsea	786
qsmooth	665
QSutils	678
qsvaR	578
QTLExperiment	478
Qtlizer	514
QUALIFIER	238
quantiseqr	1592
quantMSImageR	24
quantro	1045
quantsmooth	1179
QuartPAC	299
QuasR	1333
QuaternaryProd	432
QUBIC	606
queeems	274
qusage	1180
qvalue	27324
R3CPET	726
r3Cseq	944
R453Plus1Toolbox	862
R4RNA	1242
RadioGx	689
raer	612
RaggedExperiment	1696
RAIDS	513
rain	724
rama	353
RamiGO	140
ramr	601
ramwas	789
RandomWalkRestartMH	194
randPack	632
randRotation	344
RankMap	295
RankProd	968
RAREsim	400
RareVariantVis	799
Rariant	316
Rarr	822
rawDiag	390
rawrr	572
RbcBook1	1088
Rbec	359
RBedMethyl	316
RBGL	10652
RBioFormats	708
RBioinf	490
rBiopaxParser	1186
rBLAST	487
RBM	590
Rbowtie	1032
Rbowtie2	755
RbowtieCuda	157
RBPEqBind	4
RBPSpecificity	96
rbsurv	670
Rbwa	365
Rcade	422
RCAS	839
RCASPAR	480
rcellminer	813
rCGH	1029
Rchemcpp	224
RchyOptimyx	215
RcisTarget	1657
RCM	675
Rcollectl	164
Rcpi	798
RCSL	534
Rcwl	514
RcwlPipelines	490
RCX	545
RCy3	1638
RCyjs	689
RCytoscape	148
RDAVIDWebService	227
Rdbi	108
RdbiPgSQL	45
rDGIdb	208
Rdisop	1339
RDRToolbox	643
ReactomeContentService4R	123
ReactomeGraph4R	108
ReactomeGSA	702
ReactomePA	6533
readat	141
ReadqPCR	751
reb	366
REBET	466
rebook	527
receptLoss	183
reconsi	413
recount	1203
recount3	1386
recountmethylation	706
recoup	900
RedeR	1044
RedisParam	460
REDseq	759
ReducedExperiment	454
RefNet	219
RefPlus	511
Rega	274
RegEnrich	609
regionalpcs	402
RegionalST	560
regioneR	2797
regioneReloaded	525
regionReport	847
regsplice	641
regutools	632
REMP	695
Repitools	673
ReportingTools	1438
reposTools	46
RepViz	517
ReQON	349
ResidualMatrix	5448
RESOLVE	516
Resourcerer	133
restfulSE	285
retrofit	498
ReUseData	382
rexposome	923
rfaRm	569
Rfastp	634
rfcdmin	35
RFGeneRank	175
RFLOMICS	537
rflowcyt	154
rfPred	761
rGADEM	586
RGalaxy	273
rGenomeTracks	451
Rgin	116
RGMQL	187
RgnTX	234
rgoslin	580
RGraph2js	663
Rgraphviz	11049
rGREAT	1447
RGSEA	723
rgsepd	775
rhdf5	27152
rhdf5client	648
rhdf5filters	25865
Rhdf5lib	28360
rhinotypeR	429
Rhisat2	710
Rhtslib	27697
rHVDM	371
RiboCrypt	593
RiboDiPA	602
RiboProfiling	569
ribor	588
riboSeqR	856
ribosomeProfilingQC	743
rifi	490
rifiComparative	428
Rigraphlib	2495
rigvf	297
RImmPort	511
Ringo	630
Rintact	68
RIPAT	186
RIPSeeker	272
Risa	434
RITAN	588
RIVER	638
RJMCMCNucleosomes	691
RLassoCox	417
RLMM	565
RLSeq	130
RMAGEML	63
Rmagpie	678
RMAPPER	101
RMassBank	922
rMAT	224
rmelting	484
RmiR	240
Rmmquant	590
rmspc	518
RmzTabM	55
RNAAgeCalc	679
RNAdecay	492
rnaEditr	578
RNAinteract	355
RNAither	329
RNAmodR	724
RNAmodR.AlkAnilineSeq	641
RNAmodR.ML	671
RNAmodR.RiboMethSeq	595
RNAprobR	208
RNAsense	539
rnaseqcomp	644
RNAseqCovarImpute	460
RnaSeqGeneEdgeRQL	29
rnaSeqMap	338
RNASeqPower	617
RNASeqR	144
RnaSeqSampleSize	675
RNAshapeQC	312
RnBeads	1065
Rnits	724
roar	807
roastgsa	509
ROC	1997
ROCpAI	508
RolDE	474
Roleswitch	216
Rolexa	167
rols	1153
ROntoTools	870
ropls	2736
ROSeq	676
ROTS	802
RPA	776
rprimer	605
RProtoBufLib	3557
RpsiXML	492
rpx	1193
Rqc	990
rqt	543
rqubic	527
rRDP	433
Rredland	61
RRHO	580
rrvgo	1306
Rsamtools	30396
rsbml	574
rScudo	624
rsemmed	494
RSeqAn	488
rSFFreader	193
RSNPper	73
Rsubread	2722
RSVSim	767
rSWeeP	527
rTANDEM	246
RTCA	623
RTCGA	1028
RTCGAToolbox	1312
RTN	845
RTNduals	582
RTNsurvival	611
RTools4TB	42
RTopper	813
Rtpca	560
rtracklayer	25599
Rtreemix	466
rTRM	898
rTRMui	649
RUCova	493
runibic	321
Ruuid	117
RUVcorr	625
RUVnormalize	609
RUVSeq	1598
Rvisdiff	496
RVS	555
RWebServices	69
rWikiPathways	890
S4Arrays	52407
S4Cartographer	87
S4Vectors	73092
safe	1401
SAGElyzer	58
sagenhaft	687
SAGx	354
SAIGEgds	565
samExploreR	97
sampleClassifier	544
SamSPECTRAL	640
sangeranalyseR	773
sangerseqR	1260
SanityR	375
SANTA	733
sapFinder	248
saps	49
SARC	132
sarks	552
saseR	466
satuRn	966
savR	183
SBGNview	653
sbgr	20
SBMLR	670
SC3	1175
scafari	520
Scale4C	668
ScaledMatrix	17275
scAlign	127
SCAN.UPC	863
scanMiR	587
scanMiRApp	613
scAnnotatR	590
SCANVIS	481
SCArray	622
SCArray.sat	466
SCATE	134
scater	11874
scatterHatch	435
scBatchQC	94
scBFA	594
SCBN	458
scBubbletree	554
scCB2	570
scCertify	8
scClassifR	63
scClassify	710
sccomp	715
scCompoundDE	82
scConform	301
scDataviz	672
scDblFinder	5352
scDD	844
scDDboost	521
scde	1032
scDesign3	518
scDiagnostics	508
scDotPlot	479
scds	1366
scECODA	419
SCFA	521
scFastDE	85
scFeatureFilter	676
scFeatures	581
scfind	93
scGPS	668
scGraphVerse	367
schex	669
scHiCcompare	385
scHOT	660
scider	494
scifer	517
ScISI	449
scLANE	461
scLang	337
scMAGeCK	89
scmap	1095
scMerge	996
scMET	563
scmeth	691
scMitoMut	432
scMultiSim	555
SCnorm	800
scone	816
Sconify	582
SCOPE	615
scoreInvHap	656
scoup	388
scp	735
scPassport	250
scPCA	650
scPipe	719
scQTLtools	425
scran	9391
scrapper	2736
scReClassify	592
scRecover	536
screenCounter	492
ScreenR	470
scRepertoire	1392
scRNAseqApp	550
scruff	756
scry	975
scShapes	394
scsR	222
scTensor	674
scTGIF	683
scTHI	521
scToppR	371
scTreeViz	602
scTypeEval	307
scuttle	13590
scviR	317
SDAMS	559
seahtrue	441
sechm	640
segmenter	641
segmentSeq	949
selectKSigs	474
SELEX	689
SemDist	725
semisup	489
SEMPLR	371
SemSim	66
SEPA	113
SEPIRA	247
seq.hotSPOT	396
seq2pathway	607
seqArchR	225
seqArchRplus	206
SeqArray	1753
seqbias	375
seqCAT	680
seqCNA	276
seqcombo	458
SeqGate	515
SeqGSEA	823
Seqinfo	44467
seqLogo	4382
seqPattern	1580
seqplots	298
seqsetvis	725
SeqSQC	808
Seqtometry	312
seqTools	363
SeqVarTools	1261
SEraster	416
sesame	1536
SETA	420
SEtools	580
sevenbridges	707
sevenC	733
sfi	324
SGCP	315
SGSeq	1056
SharedObject	634
shiny.gosling	382
shinybiocloader	298
shinyDSP	440
shinyepico	612
shinyMethyl	867
shinyTANDEM	176
ShortRead	7811
SIAMCAT	679
SICtools	593
sigaR	236
SigCheck	712
sigFeature	746
SigFuge	444
siggenes	4613
sights	596
signatureSearch	769
signeR	787
signet	72
signifinder	496
sigPathway	383
SigsPack	616
sigsquared	587
sigvar	8
SIM	693
SIMAT	629
SimBindProfiles	330
SimBu	496
SIMD	497
SimFFPE	567
SimiCviz	73
similaRpeak	717
SIMLR	824
simona	1314
simPIC	530
simpleaffy	418
simpleSeg	721
simplifyEnrichment	1734
simulatorAPMS	85
simulatorZ	232
sincell	684
singIST	260
single	208
SingleCellAlleleExperiment	488
SingleCellExperiment	23697
SingleCellSignalR	755
singleCellTK	1032
SingleMoleculeFootprinting	359
SingleR	6588
singscore	2758
SiPSiC	407
SISPA	215
sitadela	538
Site2Target	385
sitePath	552
sizepower	586
SJava	64
sketchR	490
skewr	676
slalom	383
SLGI	444
slingshot	4321
slinky	142
SLqPCR	550
SMAD	483
SMAP	376
smartid	435
SmartPhos	270
SMITE	782
smoothclust	433
smoppix	445
SMTrackR	322
SNAData	54
SNAGEE	556
snapCGH	511
snapcount	553
snifter	945
snm	643
SNPchip	378
SNPediaR	477
SNPhood	957
snpMatrix	82
SNPRelate	2583
snpStats	3161
soGGi	639
sojourner	136
SomatiCA	132
SomaticSignatures	846
SOMNiBUS	529
sosta	538
SpaceMarkers	472
SpacePAC	388
SpaceTrooper	503
spacexr	814
spade	127
Spaniel	703
SpaNorm	571
spARI	349
sparrow	854
SparseArray	58388
sparseDOSSA	215
sparseMatrixStats	20951
sparsenetgls	477
SparseSignatures	695
spaSim	553
SpatialArtifacts	395
SpatialCPie	588
spatialdataR	17
spatialDE	644
SpatialDecon	764
SpatialExperiment	10257
SpatialExperimentIO	483
spatialFDA	447
SpatialFeatureExperiment	757
spatialHeatmap	491
SpatialOmicsOverlay	588
spatialSimGP	389
spatzie	217
speckle	1120
specL	718
SpeCond	712
Spectra	4360
SpectralTAD	616
SpectraQL	397
SpectraStash	7
SpectriPy	435
SPEM	627
SPIA	1627
SPIAT	654
SPICEY	390
spicyR	781
SpidermiR	255
SpiecEasi	453
spikeLI	595
spiky	513
spillR	425
spkTools	691
splatter	1333
splicegear	289
SpliceImpactR	319
splicelogic	275
spliceR	223
spliceSites	214
SpliceWiz	764
SplicingFactory	470
SplicingGraphs	926
SplineDV	436
splineTCDiffExpr	8
splineTimeR	668
SPLINTER	705
splots	707
SpNeigh	322
SPONGE	861
spoon	410
SpotClean	604
SPOTlight	978
spotSegmentation	202
SpotSweeper	627
spqn	608
SPsimSeq	591
SQLDataFrame	253
SQUADD	261
squallms	408
sRACIPE	633
SRAdb	1088
sRAP	180
SRGnet	120
srnadiff	689
sscore	415
sscu	650
sSeq	697
ssize	631
sSNAPPY	610
SSPA	378
ssPATHS	583
ssrch	502
ssviz	672
StabMap	466
STADyUM	378
stageR	839
stam	86
STAN	306
standR	706
staRank	289
StarBioTrek	286
staRgate	374
Starr	316
STATegRa	946
StatescopeR	363
Statial	579
statTarget	757
STdeconvolve	167
stepNorm	655
stepwiseCM	147
stJoincount	370
stPipe	474
strandCheckR	645
Streamer	455
STRINGdb	4238
STROMA4	281
struct	715
Structstrings	651
structToolbox	676
StructuralVariantAnnotation	757
SubCellBarCode	603
subSeq	795
SUITOR	437
SummarizedBenchmark	295
SummarizedExperiment	52639
Summix	390
SuperCellCyto	436
supersigs	527
supraHex	516
surfaltr	575
SurfR	444
survClust	373
survcomp	2271
survtype	510
Sushi	335
sva	10785
svaNUMT	580
SVAPLSseq	139
svaRetro	618
SVM2CRM	154
SVMDO	405
SVP	455
SwarnSeq	13
SWATH2stats	638
SwathXtend	383
swfdr	607
SwimR	198
switchBox	565
switchde	621
synapsis	540
synapter	543
synergyfinder	728
SynExtend	585
synlet	561
SynMut	500
syntenet	658
systemPipeR	2234
systemPipeShiny	600
systemPipeTools	553
tadar	501
TADCompare	555
tanggle	558
TAPseq	695
target	664
TargetDecoy	565
TargetScore	657
TargetSearch	668
TarSeqQC	283
TaxSEA	398
TBSignatureProfiler	717
TCC	976
TCGAbiolinks	6713
TCGAbiolinksGUI	156
TCGAutils	1498
TCseq	1046
TDARACNE	276
TDbasedUFE	464
TDbasedUFEadv	488
TEKRABber	571
TENET	444
TENxIO	700
tenXplore	700
TEQC	821
terapadog	376
ternarynet	582
terraTCGAdata	461
TFARM	560
TFBSTools	4487
TFEA.ChIP	896
TFHAZ	766
TFutils	851
TiDEomics	130
tidybulk	940
tidyCoverage	511
tidyexposomics	412
tidyFlowCore	400
tidyomics	387
tidyprint	293
tidysbml	341
tidySingleCellExperiment	865
tidySpatialExperiment	563
tidySummarizedExperiment	735
tidytof	81
tigre	821
TileDBArray	557
tilingArray	1018
timecourse	918
timeOmics	597
timescape	435
TimeSeriesExperiment	154
TimiRGeN	184
TIN	762
TissueEnrich	800
TitanCNA	481
tkWidgets	2566
tLOH	432
TMixClust	613
TMSig	456
TNBC.CMS	200
TnT	625
TOAST	1273
tofsims	170
tomoda	560
tomoseqr	485
TOP	455
ToPASeq	181
topconfects	731
topdownr	702
topGO	3054
toppgene	183
ToxicoGx	734
TPP	935
TPP2D	616
tpSVG	452
tracktables	789
trackViewer	1486
tradeSeq	2145
TraianProt	81
TrajectoryGeometry	398
TrajectoryUtils	4300
transcriptogramer	784
transcriptR	821
transformGamPoi	562
transite	489
tRanslatome	779
transmogR	479
transomics2cytoscape	476
TransView	583
TraRe	109
traseR	899
Travel	42
traviz	203
TreeAndLeaf	661
treeclimbR	449
treeio	31557
treekoR	639
TreeSummarizedExperiment	3350
TREG	550
TReNA	17
trena	308
Trendy	670
TRESS	581
tricycle	999
TrIdent	342
triform	197
trigger	388
trio	715
triplex	843
tripr	592
tRNA	733
tRNAdbImport	611
tRNAscanImport	674
TRONCO	843
TSAR	421
TSCAN	1193
tscR	139
TSENAT	101
tspair	295
TSRchitect	234
TSSi	216
TSSr	5
ttgsea	419
TTMap	674
TurboNorm	811
TVTB	758
tweeDEseq	715
twilight	833
twoddpcr	702
txcutr	528
txdbmaker	5694
tximeta	2337
tximport	5527
TxRegInfra	99
TypeInfo	343
UCell	3539
UCSC.utils	26272
Ularcirc	676
UMI4Cats	707
uncoverappLib	628
UNDO	734
unifiedWMWqPCR	619
UniProt.ws	1466
Uniquorn	739
universalmotif	1967
updateObject	560
UPDhmm	441
uSORT	724
VAExprs	485
VanillaICE	1093
VarCon	610
variancePartition	2895
VariantAnnotation	9770
VariantExperiment	317
VariantFiltering	976
VariantTools	890
VaSP	678
vasp	49
vbmp	787
VCFArray	656
VDJdive	457
Vega	183
VegaMC	769
velociraptor	679
veloviz	444
VennDetail	664
VERSO	467
vidger	809
viper	1909
virtualArray	59
ViSEAGO	834
VisiumIO	620
visiumStitched	463
vissE	606
VISTA	265
vmrseq	437
Voyager	729
VplotR	710
vsclust	567
vsn	7310
vtpnet	638
vulcan	580
waddR	307
wateRmelon	1530
wavClusteR	790
waveTiling	256
wavFeatExt	251
weaver	580
webbioc	809
weitrix	844
widgetInvoke	34
widgetTools	2450
wiggleplotr	726
wpm	586
wppi	339
Wrench	2493
wSIR	85
XAItest	385
XBSeq	263
xCell2	575
XCIR	66
xcms	3248
xcore	590
XDE	937
XeniumIO	384
xenLite	465
Xeva	615
XINA	543
xmapbridge	607
xmapcore	46
XNAString	248
xps	306
XVector	63110
y2hStat	47
yamss	758
YAPSA	854
yaqcaffy	382
yarn	805
ZarrArray	266
zellkonverter	4116
zenith	674
zFPKM	572
zinbwave	1426
zitools	420
zlibbioc	21591
ZygosityPredictor	475