ind1KG

Data from 1000 Genomes, NA19240 (female) chr6 excerpt

Bioconductor version: Release (2.14)

Elements of samtools/bioc workflow for dealing with personal sequence focusing on identification and interpretation of rare variants

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ind1KG")

To cite this package in a publication, start R and enter:

    citation("ind1KG")

Documentation

PDF R Script ind1KG -- 1000 genomes data demo
PDF R Script Notes for eSet developers
PDF   Reference Manual

Details

biocViews ExperimentData, Genetics, HighThroughputSequencing
Version 0.2.0
License Artistic-2.0
Depends R (>= 2.10.1), chopsticks
Imports
Suggests Rsamtools, rtracklayer, GenomicFeatures, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20090506, TxDb.Hsapiens.UCSC.hg18.knownGene, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ind1KG_0.2.0.tar.gz
Windows Binary ind1KG_0.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ind1KG_0.2.0.tgz
Mac OS X 10.9 (Mavericks) ind1KG_0.2.0.tgz
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