To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ind1KG")

In most cases, you don't need to download the package archive at all.

ind1KG

 

Data from 1000 Genomes, NA19240 (female) chr6 excerpt

Bioconductor version: Release (3.1)

Elements of samtools/bioc workflow for dealing with personal sequence focusing on identification and interpretation of rare variants

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ind1KG")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ind1KG")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ind1KG")

 

PDF R Script ind1KG -- 1000 genomes data demo
PDF R Script Notes for eSet developers
PDF   Reference Manual

Details

biocViews ExperimentData, Genome, MicroarrayData, SNPData
Version 0.6.0
License Artistic-2.0
Depends R (>= 2.10.1), chopsticks
Imports
LinkingTo
Suggests Rsamtools, rtracklayer, GenomicFeatures, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20090506, TxDb.Hsapiens.UCSC.hg18.knownGene, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ind1KG_0.6.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
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