RIPSeekerData

DOI: 10.18129/B9.bioc.RIPSeekerData    

test data for RIPSeeker

Bioconductor version: Release (3.8)

The RIP-seq data in BAM format are the test data for the package RIPSeeker. The data correspond to two RIP-seq experiments, namely PRC2 and CCNT1. Raw data from NCBI Gene Expression Omnibus under accession numbers GSE17064 for PRC2 and in-house for CCNT1.

Author: Yue Li

Maintainer: Alejandro Reyes <reyes at embl.de>

Citation (from within R, enter citation("RIPSeekerData")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RIPSeekerData", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RIPSeekerData")

 

PDF R Script RIP-seq datasets for testing RIPSeeker package
PDF   Reference Manual

Details

biocViews ExperimentData, GEO, Genome, RIPSeqData, SequencingData, StemCell
Version 1.18.0
License GPL-2
Depends RIPSeeker
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RIPSeekerData_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RIPSeekerData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RIPSeekerData
Package Short Url http://bioconductor.org/packages/RIPSeekerData/
Package Downloads Report Download Stats

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