MMAPPR2data

DOI: 10.18129/B9.bioc.MMAPPR2data    

Sample Data for MMAPPR2

Bioconductor version: Release (3.10)

Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.

Author: Kyle Johnsen [aut], Jonathon Hill [cre]

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("MMAPPR2data")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMAPPR2data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMAPPR2data")

 

HTML R Script Using MMAPPR2data Resources
PDF   Reference Manual
Text   NEWS

Details

biocViews Danio_rerio_Data, ExperimentData, Genome, RNASeqData, SequencingData
Version 1.0.0
License GPL-3
Depends R (>= 3.6.0)
Imports Rsamtools
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr
SystemRequirements
Enhances MMAPPR2
URL https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613585/ https://github.com/kjohnsen/MMAPPR2
Depends On Me
Imports Me
Suggests Me MMAPPR2
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MMAPPR2data_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/MMAPPR2data
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MMAPPR2data
Package Short Url https://bioconductor.org/packages/MMAPPR2data/
Package Downloads Report Download Stats

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