This package defines an AnnotationHub resource representing multiple ontologies.
## Loading required package: BiocGenerics##
## Attaching package: 'BiocGenerics'## The following objects are masked from 'package:stats':
##
## IQR, mad, sd, var, xtabs## The following objects are masked from 'package:base':
##
## Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
## as.data.frame, basename, cbind, colnames, dirname, do.call,
## duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
## lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
## pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
## tapply, union, unique, unsplit, which.max, which.min## Loading required package: BiocFileCache## Loading required package: dbplyr## AnnotationHub with 41 records
## # snapshotDate(): 2023-10-23
## # $dataprovider: NA
## # $species: NA
## # $rdataclass: Rda
## # additional mcols(): taxonomyid, genome, description,
## # coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
## # rdatapath, sourceurl, sourcetype
## # retrieve records with, e.g., 'object[["AH97934"]]'
##
## title
## AH97934 | caro
## AH97935 | cellLineOnto
## AH97936 | cellOnto
## AH97937 | cellosaurusOnto
## AH97938 | chebi_full
## ... ...
## AH111561 | hcaoOnto_2022.12.16
## AH111562 | mondo_2022.12.01
## AH111563 | patoOnto_2023.02.17
## AH111564 | PROnto_68
## AH111565 | uberon_2023.02.14## [1] "AH97934"Session information
## R version 4.3.3 (2024-02-29)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.4 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.18-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] AnnotationHub_3.10.1 BiocFileCache_2.10.2 dbplyr_2.5.0
## [4] BiocGenerics_0.48.1 BiocStyle_2.30.0
##
## loaded via a namespace (and not attached):
## [1] KEGGREST_1.42.0 xfun_0.43
## [3] bslib_0.7.0 Biobase_2.62.0
## [5] bitops_1.0-7 vctrs_0.6.5
## [7] tools_4.3.3 generics_0.1.3
## [9] stats4_4.3.3 curl_5.2.1
## [11] tibble_3.2.1 fansi_1.0.6
## [13] AnnotationDbi_1.64.1 RSQLite_2.3.6
## [15] blob_1.2.4 pkgconfig_2.0.3
## [17] S4Vectors_0.40.2 GenomeInfoDbData_1.2.11
## [19] lifecycle_1.0.4 compiler_4.3.3
## [21] Biostrings_2.70.3 httpuv_1.6.15
## [23] GenomeInfoDb_1.38.8 htmltools_0.5.8.1
## [25] sass_0.4.9 RCurl_1.98-1.14
## [27] yaml_2.3.8 interactiveDisplayBase_1.40.0
## [29] pillar_1.9.0 later_1.3.2
## [31] crayon_1.5.2 jquerylib_0.1.4
## [33] cachem_1.0.8 mime_0.12
## [35] tidyselect_1.2.1 digest_0.6.35
## [37] purrr_1.0.2 dplyr_1.1.4
## [39] bookdown_0.38 BiocVersion_3.18.1
## [41] fastmap_1.1.1 cli_3.6.2
## [43] magrittr_2.0.3 utf8_1.2.4
## [45] withr_3.0.0 filelock_1.0.3
## [47] promises_1.3.0 rappdirs_0.3.3
## [49] bit64_4.0.5 rmarkdown_2.26
## [51] XVector_0.42.0 httr_1.4.7
## [53] bit_4.0.5 png_0.1-8
## [55] memoise_2.0.1 shiny_1.8.1.1
## [57] evaluate_0.23 knitr_1.46
## [59] IRanges_2.36.0 rlang_1.1.3
## [61] Rcpp_1.0.12 xtable_1.8-4
## [63] glue_1.7.0 DBI_1.2.2
## [65] BiocManager_1.30.22 jsonlite_1.8.8
## [67] R6_2.5.1 zlibbioc_1.48.2