To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20101109")

In most cases, you don't need to download the package archive at all.

SNPlocs.Hsapiens.dbSNP.20101109

SNP locations for Homo sapiens (dbSNP Build 132)

Bioconductor version: Release (2.14)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP.20101109")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20101109")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPlocs.Hsapiens.dbSNP.20101109")

 

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens
Version 0.99.6
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges
Imports methods, IRanges, GenomicRanges
Suggests Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
System Requirements
URL
Depends On Me
Imports Me
Suggests Me ceu1kg, VariantAnnotation

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tar.gz
Windows Binary SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tgz
Mac OS X 10.9 (Mavericks) SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tgz
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