SNPlocs.Hsapiens.dbSNP.20090506

SNP locations for Homo sapiens (dbSNP Build 130)

Bioconductor version: Release (2.14)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 130. The source data files used for this package were created by NCBI on 5-6 May, 2009, and contain SNPs mapped to reference genome NCBI Build 36.1, which is identical to the hg18 genome from UCSC. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg18 and they will land at the correct location.

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP.20090506")):

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens
Version 0.99.8
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges, BSgenome(>= 1.25.6)
Imports methods, utils, IRanges, GenomicRanges, BSgenome
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg18(>= 1.3.19)
System Requirements
URL
Depends On Me
Imports Me
Suggests Me ind1KG

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