## ----eval=FALSE--------------------------------------------------------------- # if (!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # BiocManager::install("BSgenomeForge") ## ----message=FALSE------------------------------------------------------------ library(BSgenomeForge) ## ----------------------------------------------------------------------------- forgeBSgenomeDataPkgFromNCBI(assembly_accession="GCA_009729545.1", pkg_maintainer="Jane Doe ", organism="Acidianus infernus") ## ----------------------------------------------------------------------------- forgeBSgenomeDataPkgFromNCBI(assembly_accession="GCA_008369605.1", pkg_maintainer="Jane Doe ", organism="Vibrio cholerae", circ_seqs = c("1", "2", "unnamed")) ## ----------------------------------------------------------------------------- forgeBSgenomeDataPkgFromUCSC( genome="wuhCor1", organism="Severe acute respiratory syndrome coronavirus 2", pkg_maintainer="Jane Doe " ) ## ----------------------------------------------------------------------------- devtools::build("./BSgenome.Ainfernus.NCBI.ASM972954v1") ## ----eval=FALSE--------------------------------------------------------------- # devtools::check_built("BSgenome.Ainfernus.NCBI.ASM972954v1_1.0.0.tar.gz") ## ----eval=FALSE--------------------------------------------------------------- # devtools::install_local("BSgenome.Ainfernus.NCBI.ASM972954v1_1.0.0.tar.gz") ## ----------------------------------------------------------------------------- sessionInfo()