CHANGES IN VERSION 1.2.2 ------------------------- o Compatable with different version of SeuratObject CHANGES IN VERSION 1.2.1 ------------------------- o Update the seuObject to version 5 CHANGES IN VERSION 1.1.10 ------------------------- o Fix the download button for the explorer module. CHANGES IN VERSION 1.1.9 ------------------------- o Fix the repeat retreive for reference by createAppConfig. CHANGES IN VERSION 1.1.8 ------------------------- o Change the filepath for credential file. CHANGES IN VERSION 1.1.7 ------------------------- o Fix the bug in scInit for datafolder. CHANGES IN VERSION 1.1.6 ------------------------- o Fix the download button which download the fixed values. o Add multiple subset buttons. CHANGES IN VERSION 1.1.5 ------------------------- o List the available datasets by users privilege. CHANGES IN VERSION 1.1.4 ------------------------- o Fix the bug if the data is removed where user is explorering. CHANGES IN VERSION 1.1.3 ------------------------- o Fix the bug introduced by changing actionBution to checkboxInput for modBubbleHeatmap. CHANGES IN VERSION 1.1.2 ------------------------- o Add multiple layer of violin plot o Add sample order controls for stats plot CHANGES IN VERSION 1.1.1 ------------------------- o Fix the bug that `coverage` function is not imported. CHANGES IN VERSION 0.99.27 ------------------------- o Fix the subtitles for scATACseq data. CHANGES IN VERSION 0.99.25 ------------------------- o Fix a typo when fixing the chromsome name style for scATACseq data. CHANGES IN VERSION 0.99.24 ------------------------- o Add tracks for scATACseq data. CHANGES IN VERSION 0.99.23 ------------------------- o Add title for ATAC plot buttons. CHANGES IN VERSION 0.99.22 ------------------------- o Fix the issue if there is no reference. CHANGES IN VERSION 0.99.21 ------------------------- o Fix the typo for `createDataset` function. CHANGES IN VERSION 0.99.20 ------------------------- o Add zoom in and out for atac track plots. CHANGES IN VERSION 0.99.19 ------------------------- o Update the atac track plots. CHANGES IN VERSION 0.99.18 ------------------------- o Simplify the about module. CHANGES IN VERSION 0.99.17 ------------------------- o Update documentation for cellgene VIP. CHANGES IN VERSION 0.99.16 ------------------------- o fix the bug for cell index for waffleplot. CHANGES IN VERSION 0.99.15 ------------------------- o fix the bug if no reference can be retrieved. CHANGES IN VERSION 0.99.14 ------------------------- o fix the bug if no markers can be detected. CHANGES IN VERSION 0.99.13 ------------------------- o remove aes_string. CHANGES IN VERSION 0.99.12 ------------------------- o fix the dropdown names issue. CHANGES IN VERSION 0.99.11 ------------------------- o add check/uncheck all to subset cells. CHANGES IN VERSION 0.99.10 ------------------------- o fix the multiple loading. CHANGES IN VERSION 0.99.9 ------------------------- o fix the long table in vignette. CHANGES IN VERSION 0.99.8 ------------------------- o add app_path to app to fix the issue of missing files. CHANGES IN VERSION 0.99.6 ------------------------- o add ATAC plots. CHANGES IN VERSION 0.99.5 ------------------------- o Update R version dependency from 4.2.0 to 4.3.0 o remove 'CellChat', 'monocle3' and 'SeuratWrappers'. o re-organize the files in extdata to script and add documentation. o remove the `eval=FALSE` in vignettes and add `publish_folder` to scripts. o change the parameter of `cat` to `category` for `helper1` function. o remove `suppressWarnings/Messages`. o re-format the code style to fit 80 line width and 4 spaces for line indents. o add function to save ATAC peaks. CHANGES IN VERSION 0.99.4 ------------------------- o Update documentation. CHANGES IN VERSION 0.99.3 ------------------------- o Fix the heatmap donwload button. CHANGES IN VERSION 0.99.2 ------------------------- o Fix multiple notes. CHANGES IN VERSION 0.99.1 ------------------------- o Prepare for release.