************************************************** * 0.1 SERIES NEWS * ************************************************** New package for prediction of nucleosome positioning. ************************************************** * 1.1 SERIES NEWS * ************************************************** ver. 1.1.1/2018-11-30 The new biocViews tag "ImmunoOncology" was added to the biocViews field of the DESCRIPTION file. ver. 1.1.3/2019-01-22 Parameters (linker length distribution for budding and fission yeasts) in sysdata.rda were replaced. nature11142_s2.linker.147.prob_SMA sd01.linker.147.prob_SMA The above replacement slightly affect the calculation results of predNuCpos and mutNuCpos. HBA and localHBA will not be affected. ver. 1.1.5/2019-02-04 Parameters for localHBA in sysdata.rda were renamed. Fortran code for localHBA was replaced to fit the above change. The output of localHBA will not be affected. ************************************************** * 1.5 SERIES NEWS * ************************************************** ver. 1.5.1/2019-11-08 predNuCposActLikePredNuPoP.R, nuCpos_1.f90, nuCpos_2.f90, HBA.R, HBA_3.f90, localHBA.R, localHBA_3.f90, predNuCposInternal.R, nuCpos2_1.f90, nuCpos2_2.f90 and mutNuCpos.R were revised not to pass character string to Fortran subroutines. LICENSE were sited in DESCRIPTION. * Note (2022-08-03) * The above statements on ver. 1.5.1 was incorrect. * They were on ver. 1.15.0. ************************************************** * 1.15 SERIES NEWS * ************************************************** ver. 1.15.1/2022-08-08 Acknowledging the update of NuPoP, the abstract and manual of nuCpos were modified. mutNuCpos was removed. ver. 1.15.2/2022-08-09 bug fix ver. 1.15.3/2022-08-10 bug fix ************************************************** * 1.17 SERIES NEWS * ************************************************** ver. 1.17.1/2023-02-14 predNuCpos was removed as a similar function is available in NuPoP. ver. 1.17.2/2023-02-14 bug fix ver. 1.17.3/2023-02-15 HBA was replaced with a new version, which does not invoke a fortran subroutine. ver. 1.17.4/2023-02-16 localHBA was replaced with a new version, which does not invoke a fortran subroutine.