Changes in version 0.0.1 (2019-02-01) + Added direct support for `seurat` and other object classes + Updated readme and tutorial pages + Moved some larger reference data to `clustifyrdata` Changes in version 0.0.2 (2019-05-29) + Updated discussions, benchmark, and visualization example pages + Reorganized `clustifyrdata` data package Changes in version 0.0.3 (2019-09-06) + Support of SingleCellExperiment objects and more + Bug fixes Changes in version 0.99.0 (2019-11-06) + Update to tutorials + Refactor arguments + Bug fixes + Cleanup for Bioconductor submission Changes in version 1.1.0 (2020-05-21) + Bioc release + Bug fixes Changes in version 1.1.2 (2020-09-21) + USCS cell browser reference building + Tutorial update + Bug fixes Changes in version 1.3.1 (2020-12-26) + Q&A section + Now defaults to top 1000 variable genes in Seurat (including v4) + Bug fixes Changes in version 1.3.2 (2021-02-25) + `build_atlas()` for combining references + More Q&A Changes in version 1.3.3 (2021-02-28) + Launch shiny app with `run_clustifyr_app()` + Plot and GO for most divergent ranks in correlation of query vs reference Changes in version 1.5.1 (2021-08-04) + `clustify_lists()` support for uneven number of markers + Deprecated SeuratV2 support Changes in version 1.5.2 (2021-10-04) + `clustify_lists()` support for output of overlapping genes (`details_out = TRUE`) + Added truncated mean and trimean modes to `average_clusters()` Changes in version 1.7.3 (2022-03-09) + `vec_out` option for directly getting classification results as a vector, to be inserted into other metadata/workflow + Maintainer change