Changes in version 1.18.0
USER VISIBLE CHANGES
o Using NEWS.Rd
o oligoSnpSet, CopyNumberSet, and BeadStudioSet (defined in
oligoClasses) require that all assayData elements are integer
matrices. In particular, copy number should be scaled by 100
and coerced to integers and B allele frequencies should be
scaled by 1000 and coerced to integers. The function
integerMatrix(x, 100) in the oligoClasses package will coerce a
matrix of doubles, 'x', to a matrix of integers scaled by a
factor of 100. The hmm methods for these classes expect that
the assay data elements are appropriately scaled integer
matrices.