Changes in version 1.2.1 - Fixed bug in .check_features and .symbol2id where "symbol" column is hard coded Changes in version 1.1.6 - Read images as SpatRaster, in read10xVisiumSFE - read10xVisiumSFE can also convert full resolution image pixels to microns based on Visium spot spacing - read10xVisiumSFE no longer transposes output from read10xVisium so the spots would match the image by default, and to be consistent with SpatialExperiment - Read standard Vizgen MERFISH output with readVizgen - SpatRasterImage class inheriting from VirtualSpatialImage for SpatialExperiment compatibility - Methods of addImg, mirrorImg, and transposeImg for SpatRasterImage and SFE - Mirror and transpose SFE objects, operating on both geometries and images - Images are cropped when the SFE object is cropped - Images are also shifted when removeEmptySpace is called Changes in version 1.1.4 - Store SFE package version in object and added SFE method of updateObject to pave way for a potential reimplementation of spatialGraphs. Changes in version 1.1.3 - Use BiocNeighbors for k nearest neighbors and distance based neighbors, preserving distance info to avoid slow step to refind distances with sf as done in spdep. - Added swap_rownames argument in localResult(s) getters so gene symbols from any rowData column can be used to get local results stored under Ensembl IDs. Changes in version 1.0.3 - Correctly move the geometries when there are multiple samples - Use translate = FALSE when using localResult setter for geometries - More helpful error messages when geometries, localResult, or spatial graphs are absent Changes in version 1.0.2 - Correctly move spatialCoords in removeEmptySpace - Preserve rownames when setting colGeometry for some of all samples Changes in version 1.0.0 - First version on Bioconductor Changes in version 0.99.4 - Added \code{localResults} field - Also reimplemented some of the internals behind \code{dimGeometries} Changes in version 0.99.0 - Hello world! - For my personal record, this package was submitted to Bioconductor on July 22