Changes in version 0.99.9 (2020-04-14): o Formatted package for Bioconductor. Changes include: o Added runnable examples o Reformatted source code to match Bioconductor practices Changes in version 1.1.0: o Made the following significant changes o Incorporate ShinyGPA developed by Emma Kortemeier as a part of the R package. o Add fitAll() to fit GPA models for possible pairs of phenotypes. o Add shinyGPA() to open the shiny app for the interactive pleiotropy visualization. Changes in version 0.9.3: o Made the following significant changes o Incorporate R package vignette. o assoc(), fdr(): allows association mapping & local FDR for specific association status. o aTest(), pTest(): message() was replaced with cat(). Changes in version 0.9.2: o Made the following significant changes o Add se() to provide parameter estimates and their standard errors. Changes in version 0.9.1: o Made the following significant changes o Add fdr() to provide local FDR that a SNP is not associated with each phenotype. o Add assoc() for association mapping. o The function aTest() and methods show() and cov() for class 'GPA' now provide estimates and standard error for the ratio of q in each association class over the baseline. o In GPA(), 'initBetaMean' argument is replaced with 'initBetaAlpha'. o Generally improve robustness of functions by checking input for arguments. Changes in version 0.9.0: o The first version of GPA R package.