Changes in version 1.7.3 o Add approaches based on pValue and qValue to generate present/absent calls o Default approach to generate calls is pValue o Add function ```merging_libraries``` allowing to merge calls per condition Changes in version 1.5.3 o Add function ```generate_slurm_indexes``` generating kallisto indexes on a cluster with slurm queing system o Add function ```generate_slurm_calls``` generating expression calls on a cluster with slurm queing system o Update documentation o Add ?BgeeCall documentation with link to main functions Changes in version 1.4.0 o Add verbose slot in UserMetadata o Add slots allowing not to rerun steps of the workflow. Do not rerun by default o Update documentation o New functionalties when running BgeeCall from list of libraries Changes in version 1.2.0 o Moved from workflow to software section Changes in version 1.1.1 o Better manage transcript version o Manage output directory when calls are generated for several libraries o Manage transcript version when calls are generated for several libraries Changes in version 1.1.0 o Change kmer size of kallisto index from 21 to 15 for libraries with readLength <= 50bp o Can choose the output directory o By default use a simpler arborescence for the output directory o Can use reference intergenic sequences generated by the community o Can use custom reference intergenic sequences from a local fastq file Changes in version 1.0.0 o Public release of BgeeCall package. Enjoy!!!