To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

In most cases, you don't need to download the package archive at all.

yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: Release (3.0)

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

Citation (from within R, enter citation("yaqcaffy")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

 

PDF R Script yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.26.0
In Bioconductor since BioC 2.2 (R-2.7)
License Artistic-2.0
Depends simpleaffy(>= 2.19.3), methods
Imports stats4
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
URL
Depends On Me
Imports Me
Suggests Me qcmetrics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source yaqcaffy_1.26.0.tar.gz
Windows Binary yaqcaffy_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) yaqcaffy_1.26.0.tgz
Mac OS X 10.9 (Mavericks) yaqcaffy_1.26.0.tgz
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