To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

In most cases, you don't need to download the package archive at all.

yaqcaffy

 

   

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: Release (3.4)

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("yaqcaffy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

 

PDF R Script yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.34.0
In Bioconductor since BioC 2.2 (R-2.7) (8.5 years)
License Artistic-2.0
Depends simpleaffy(>= 2.19.3), methods
Imports stats4
LinkingTo
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me qcmetrics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source yaqcaffy_1.34.0.tar.gz
Windows Binary yaqcaffy_1.34.0.zip
Mac OS X 10.9 (Mavericks) yaqcaffy_1.34.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/yaqcaffy/tree/release-3.4
Package Short Url http://bioconductor.org/packages/yaqcaffy/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: