DOI: 10.18129/B9.bioc.yaqcaffy    

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: Release (3.8)

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("yaqcaffy")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("yaqcaffy", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF   Reference Manual
Text   NEWS


biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.42.0
In Bioconductor since BioC 2.2 (R-2.7) (11 years)
License Artistic-2.0
Depends simpleaffy(>= 2.19.3), methods
Imports stats4
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
Depends On Me
Imports Me
Suggests Me qcmetrics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yaqcaffy_1.42.0.tar.gz
Windows Binary yaqcaffy_1.42.0.zip
Mac OS X 10.11 (El Capitan) yaqcaffy_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/yaqcaffy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yaqcaffy
Package Short Url http://bioconductor.org/packages/yaqcaffy/
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