To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("waveTiling")

In most cases, you don't need to download the package archive at all.

waveTiling

Wavelet-Based Models for Tiling Array Transcriptome Analysis

Bioconductor version: Release (3.0)

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

Citation (from within R, enter citation("waveTiling")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("waveTiling")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("waveTiling")

 

PDF R Script The waveTiling package
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse
Version 1.8.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>=2)
Depends oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges
Suggests BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart12
System Requirements
URL https://r-forge.r-project.org/projects/wavetiling/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source waveTiling_1.8.0.tar.gz
Windows Binary waveTiling_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) waveTiling_1.8.0.tgz
Mac OS X 10.9 (Mavericks) waveTiling_1.8.0.tgz
Browse/checkout source (username/password: readonly)
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