To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("tweeDEseq")

In most cases, you don't need to download the package archive at all.

tweeDEseq

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: Release (3.0)

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("tweeDEseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")

 

PDF R Script tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF   Reference Manual

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.12.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports MASS, limma, edgeR, parallel, cqn
Suggests tweeDEseqCountData, xtable
System Requirements
URL http://www.creal.cat/jrgonzalez/software.htm
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source tweeDEseq_1.12.0.tar.gz
Windows Binary tweeDEseq_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) tweeDEseq_1.12.0.tgz
Mac OS X 10.9 (Mavericks) tweeDEseq_1.12.0.tgz
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