To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("triform")

In most cases, you don't need to download the package archive at all.

triform

DOI: 10.18129/B9.bioc.triform    

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: Release (3.6)

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony Handstad Developer [aut, cre]

Maintainer: Thomas Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("triform")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("triform")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("triform")

 

PDF R Script Triform users guide
PDF   Reference Manual

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.20.0
In Bioconductor since BioC 2.11 (R-2.15) (5 years)
License GPL-2
Depends R (>= 2.11.0), IRanges, yaml
Imports BiocGenerics, IRanges(>= 2.5.27), yaml
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package triform_1.20.0.tar.gz
Windows Binary triform_1.20.0.zip
Mac OS X 10.11 (El Capitan) triform_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/triform
Package Short Url http://bioconductor.org/packages/triform/
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