To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceSites")

In most cases, you don't need to download the package archive at all.

spliceSites

 

   

A bioconductor package for exploration of alignment gap positions from RNA-seq data

Bioconductor version: Release (3.3)

Performs splice centered analysis on RNA-seq data.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("spliceSites")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceSites")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

 

PDF R Script spliceSites
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Proteomics, RNAseq, Software
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (3 years)
License GPL-2
Depends methods, rbamtools (>= 2.14.3), refGenome (>= 1.6.0), Biobase, Biostrings(>= 2.28.0)
Imports BiocGenerics, doBy, seqLogo, IRanges
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spliceSites_1.20.0.tar.gz
Windows Binary spliceSites_1.20.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) spliceSites_1.20.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/spliceSites/tree/release-3.3
Package Short Url http://bioconductor.org/packages/spliceSites/
Package Downloads Report Download Stats

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