To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spade")

In most cases, you don't need to download the package archive at all.

spade

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: Release (2.14)

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson

Maintainer: Michael Linderman <michael.d.linderman at gmail.com>

Citation (from within R, enter citation("spade")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spade")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spade")

 

PDF R Script spade package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization
Version 1.12.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends R (>= 2.11), igraph, Rclusterpp
Imports Biobase, flowCore
Suggests flowViz
System Requirements
URL http://cytospade.org
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spade_1.12.0.tar.gz
Windows Binary spade_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spade_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
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