signet

DOI: 10.18129/B9.bioc.signet    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

signet: Selection Inference in Gene NETworks

Bioconductor version: Release (3.12)

An R package to detect selection in biological pathways. Using gene selection scores and biological pathways data, one can search for high-scoring subnetworks of genes within pathways and test their significance.

Author: Alexandre Gouy <alexandre.gouy at iee.unibe.ch>

Maintainer: <>

Citation (from within R, enter citation("signet")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("signet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, GraphAndNetwork, KEGG, NetworkEnrichment, Pathways, Software
Version 1.10.0
In Bioconductor since BioC 3.7 (R-3.5) (2.5 years)
License GPL-2
Depends R (>= 3.4.0)
Imports graph, igraph, RBGL, graphics, utils, stats, methods
LinkingTo
Suggests graphite, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/signet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/signet
Package Short Url https://bioconductor.org/packages/signet/
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