seqCNA

DOI: 10.18129/B9.bioc.seqCNA    

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: Release (3.7)

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Citation (from within R, enter citation("seqCNA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqCNA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")

 

PDF R Script seqCNA.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Genetics, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL-3
Depends R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
LinkingTo
Suggests
SystemRequirements samtools
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqCNA_1.26.0.tar.gz
Windows Binary seqCNA_1.26.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) seqCNA_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqCNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqCNA
Package Short Url http://bioconductor.org/packages/seqCNA/
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