seqCNA

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: Release (2.14)

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("seqCNA")

To cite this package in a publication, start R and enter:

    citation("seqCNA")

Documentation

PDF R Script seqCNA
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Genetics, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
Suggests
System Requirements samtools
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source seqCNA_1.6.0.tar.gz
Windows Binary seqCNA_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) seqCNA_1.6.0.tgz
Mac OS X 10.9 (Mavericks)
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