scsR

DOI: 10.18129/B9.bioc.scsR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

SiRNA correction for seed mediated off-target effect

Bioconductor version: Release (3.12)

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>

Citation (from within R, enter citation("scsR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scsR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Preprocessing, Software
Version 1.26.0
In Bioconductor since BioC 2.14 (R-3.1) (6.5 years)
License GPL-2
Depends R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/scsR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scsR
Package Short Url https://bioconductor.org/packages/scsR/
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