readat

DOI: 10.18129/B9.bioc.readat    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Functionality to Read and Manipulate SomaLogic ADAT files

Bioconductor version: Release (3.11)

This package contains functionality to import, transform and annotate data from ADAT files generated by the SomaLogic SOMAscan platform.

Author: Richard Cotton <richierocks at gmail.com>, Aditya Bhagwat <adb2018 at qatar-med.cornell.edu>

Maintainer: Richard Cotton <richierocks at gmail.com>

Citation (from within R, enter citation("readat")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("readat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, GeneExpression, OneChannel, ProprietaryPlatforms, Proteomics, Software
Version 1.14.0
In Bioconductor since BioC 3.4 (R-3.3) (3.5 years)
License GPL-3
Depends R (>= 3.4.0)
Imports assertive.base (>= 0.0-7), assertive.files (>= 0.0-2), assertive.numbers (>= 0.0-2), assertive.properties (>= 0.0-4), assertive.sets (>= 0.0-3), assertive.types (>= 0.0-3), Biobase(>= 2.34.0), data.table (>= 1.10.4), dplyr (>= 0.5.0), magrittr (>= 1.5), openxlsx (>= 4.0.17), pathological (>= 0.1-2), reshape2 (>= 1.4.2), stats, stringi (>= 1.1.5), SummarizedExperiment(>= 1.4.0), testthat (>= 1.0.2), tidyr (>= 0.6.2), utils
LinkingTo
Suggests knitr, MSnbase, rmarkdown, withr
SystemRequirements
Enhances
URL https://bitbucket.org/graumannlabtools/readat
BugReports https://bitbucket.org/graumannlabtools/readat/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/readat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/readat
Package Short Url https://bioconductor.org/packages/readat/
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