To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rSFFreader")

In most cases, you don't need to download the package archive at all.

rSFFreader

 

rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers

Bioconductor version: Release (3.1)

rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present for fastq files.

Author: Matt Settles <msettles at uidaho.edu>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho

Maintainer: Matt Settles <msettles at uidaho.edu>

Citation (from within R, enter citation("rSFFreader")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rSFFreader")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rSFFreader")

 

PDF R Script An introduction to rSFFreader
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Sequencing, Software
Version 0.16.0
In Bioconductor since BioC 2.11 (R-2.15) (3 years)
License Artistic-2.0
Depends ShortRead(>= 1.23.17)
Imports methods, Biostrings, IRanges
LinkingTo S4Vectors, IRanges, XVector, Biostrings
Suggests xtable
SystemRequirements
Enhances
URL
Depends On Me
Imports Me hiReadsProcessor
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rSFFreader_0.16.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) rSFFreader_0.16.0.tgz
Mac OS X 10.9 (Mavericks) rSFFreader_0.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rSFFreader/tree/release-3.1
Package Short Url http://bioconductor.org/packages/rSFFreader/
Package Downloads Report Download Stats

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