To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("phenoDist")

In most cases, you don't need to download the package archive at all.

phenoDist

 

Phenotypic distance measures

Bioconductor version: Release (3.1)

PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros

Maintainer: Xian Zhang <xianzhang at gmail.com>

Citation (from within R, enter citation("phenoDist")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("phenoDist")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenoDist")

 

PDF R Script Introduction to phenoDist
PDF   Reference Manual

Details

biocViews CellBasedAssays, Software
Version 1.16.0
In Bioconductor since BioC 2.8 (R-2.13) (4.5 years)
License LGPL-2.1
Depends R (>= 2.9.0), imageHTS, e1071
Imports
LinkingTo
Suggests GOstats, MASS
SystemRequirements
Enhances
URL http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source phenoDist_1.16.0.tar.gz
Windows Binary phenoDist_1.16.0.zip
Mac OS X 10.6 (Snow Leopard) phenoDist_1.16.0.tgz
Mac OS X 10.9 (Mavericks) phenoDist_1.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/phenoDist/tree/release-3.1
Package Short Url http://bioconductor.org/packages/phenoDist/
Package Downloads Report Download Stats

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