To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("nudge")

In most cases, you don't need to download the package archive at all.

nudge

Normal Uniform Differential Gene Expression detection

Bioconductor version: Release (3.0)

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Citation (from within R, enter citation("nudge")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("nudge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nudge")

 

PDF R Script nudge Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Software, TwoChannel
Version 1.32.0
In Bioconductor since BioC 1.8 (R-2.3)
License GPL-2
Depends
Imports stats
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source nudge_1.32.0.tar.gz
Windows Binary nudge_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) nudge_1.32.0.tgz
Mac OS X 10.9 (Mavericks) nudge_1.32.0.tgz
Browse/checkout source (username/password: readonly)
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