multiSight

DOI: 10.18129/B9.bioc.multiSight    

Multi-omics Classification, Functional Enrichment and Network Inference analysis

Bioconductor version: Release (3.14)

multiSight is an R package providing an user-friendly graphical interface to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods. For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature: (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping), (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis), (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven.

Author: Florian Jeanneret [cre, aut] , Stephane Gazut [aut]

Maintainer: Florian Jeanneret <florian.jeanneret at cea.fr>

Citation (from within R, enter citation("multiSight")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("multiSight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiSight")

 

HTML R Script multiSight quick start guide
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Classification, DifferentialExpression, GeneSetEnrichment, Network, NetworkInference, Pathways, RNASeq, Software, miRNA
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License CeCILL + file LICENSE
Depends R (>= 4.1)
Imports golem, config, R6, shiny, shinydashboard, DT, dplyr, stringr, anyLib, caret, biosigner, mixOmics, stats, DESeq2, clusterProfiler, rWikiPathways, ReactomePA, enrichplot, ppcor, metap, infotheo, igraph, networkD3, easyPubMed, utils, htmltools, rmarkdown
LinkingTo
Suggests org.Mm.eg.db, rlang, markdown, attempt, processx, testthat, knitr, BiocStyle
SystemRequirements
Enhances
URL
BugReports https://github.com/Fjeanneret/multiSight/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiSight_1.2.0.tar.gz
Windows Binary multiSight_1.2.0.zip
macOS 10.13 (High Sierra) multiSight_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/multiSight
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiSight
Package Short Url https://bioconductor.org/packages/multiSight/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: