To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metavizr")

In most cases, you don't need to download the package archive at all.

metavizr

DOI: 10.18129/B9.bioc.metavizr    

R Interface to the metaviz web app for interactive metagenomics data analysis and visualization

Bioconductor version: Release (3.5)

This package provides Websocket communication to the metaviz web app (http://metaviz.cbcb.umd.edu) for interactive visualization of metagenomics data. Objects in R/bioc interactive sessions can be displayed in plots and data can be explored using a facetzoom visualization. Fundamental Bioconductor data structures are supported (e.g., MRexperiment objects), while providing an easy mechanism to support other data structures. Visualizations (using d3.js) can be easily added to the web app as well.

Author: Hector Corrada Bravo [cre, aut], Florin Chelaru [aut], Justin Wagner [aut], Jayaram Kancherla [aut], Joseph Paulson [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("metavizr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metavizr")

Documentation

HTML R Script Introduction to metavizr
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GUI, Infrastructure, Metagenomics, Software, Visualization
Version 1.0.2
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License MIT + file LICENSE
Depends R (>= 3.3), metagenomeSeq(>= 1.17.1), methods, data.table, Biobase, digest
Imports epivizr, epivizrData, epivizrServer, epivizrStandalone, vegan, GenomeInfoDb, phyloseq, httr
LinkingTo
Suggests knitr, BiocStyle, matrixStats, msd16s(>= 0.109.1), etec16s, testthat, gss
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source metavizr_1.0.2.tar.gz
Windows Binary metavizr_1.0.2.zip
Mac OS X 10.11 (El Capitan) metavizr_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/metavizr
Package Short Url http://bioconductor.org/packages/metavizr/
Package Downloads Report Download Stats

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