imageHTS

Analysis of high-throughput microscopy-based screens

Bioconductor version: Release (2.14)

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Gregoire Pau <gregoire.pau at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("imageHTS")

To cite this package in a publication, start R and enter:

    citation("imageHTS")

Documentation

PDF R Script Analysis of high-throughput microscopy-based screens with imageHTS
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, Preprocessing, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.7 (R-2.12)
License LGPL-2.1
Depends R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0)
Imports tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
Suggests BiocStyle, MASS
System Requirements
URL
Depends On Me phenoDist
Imports Me
Suggests Me

Package Downloads

Package Source imageHTS_1.14.0.tar.gz
Windows Binary imageHTS_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) imageHTS_1.14.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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