DOI: 10.18129/B9.bioc.htSeqTools    

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Quality Control, Visualization and Processing for High-Throughput Sequencing data

Bioconductor version: Release (3.7)

We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.

Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell

Maintainer: Oscar Reina <oscar.reina at>

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PDF R Script Manual for the htSeqTools library
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Text   NEWS


biocViews QualityControl, Sequencing, Software
Version 1.28.3
In Bioconductor since BioC 2.9 (R-2.14) (7 years)
License GPL (>=2)
Depends R (>= 2.12.2), methods, BiocGenerics(>= 0.1.0), Biobase, S4Vectors, IRanges, methods, MASS, BSgenome, GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.17.11)
Enhances parallel, multicore
Depends On Me
Imports Me
Suggests Me
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