To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

In most cases, you don't need to download the package archive at all.

goseq

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: Release (2.14)

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Nadia Davidson <nadia.davidson at mcri.edu.au>

Citation (from within R, enter citation("goseq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")

 

PDF R Script goseq User's Guide
PDF   Reference Manual

Details

biocViews GO, GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.16.2
In Bioconductor since BioC 2.6 (R-2.11)
License LGPL (>= 2)
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports mgcv, graphics, stats, utils, AnnotationDbi
Suggests GO.db, edgeR, org.Hs.eg.db, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source goseq_1.16.2.tar.gz
Windows Binary goseq_1.16.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) goseq_1.16.2.tgz
Mac OS X 10.9 (Mavericks) goseq_1.16.2.tgz
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