To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggcyto")

In most cases, you don't need to download the package archive at all.

ggcyto

DOI: 10.18129/B9.bioc.ggcyto    

Visualize Cytometry data with ggplot

Bioconductor version: Release (3.6)

With the dedicated fority method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("ggcyto")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggcyto")

Documentation

HTML R Script Feature summary of ggcyto
HTML R Script Quick plot for cytometry data
HTML R Script Visualize flowSet with ggcyto
HTML R Script Visualize GatingSet with ggcyto
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, FlowCytometry, Infrastructure, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License Artistic-2.0
Depends methods, ggplot2 (>= 2.0.0), flowCore(>= 1.41.5), ncdfFlow(>= 2.17.1), flowWorkspace(>= 3.17.24)
Imports plyr, scales, data.table, RColorBrewer, gridExtra
LinkingTo
Suggests testthat, flowWorkspaceData, knitr, rmarkdown, flowStats, openCyto, flowViz, ggjoy
SystemRequirements
Enhances
URL https://github.com/RGLab/ggcyto/issues
Depends On Me
Imports Me CytoML
Suggests Me flowCore, flowWorkspace, openCyto
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggcyto_1.6.0.tar.gz
Windows Binary ggcyto_1.6.0.zip
Mac OS X 10.11 (El Capitan) ggcyto_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggcyto
Package Short Url http://bioconductor.org/packages/ggcyto/
Package Downloads Report Download Stats

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